File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/474c51404eff25cd7dcf2bd793cfe8/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T23:55:48.247868Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.250551Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.250562Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.250567Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.250571Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXmeIu33'
[2026-05-27T23:55:48.250574Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.250580Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.250583Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.250588Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:48.250593Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.250598Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.250602Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.250607Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.250611Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.251559Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.251680Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.257496Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.258385Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.258656Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.258871Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.259096Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.259713Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.259799Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.259869Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.259983Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.260050Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.260184Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.260371Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.260680Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.260995Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.261214Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.261362Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.261675Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.263468Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.263703Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.263908Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.263977Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.264088Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.264150Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.264371Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.264548Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.264777Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.265136Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.265202Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.265313Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.265373Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.265826Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.265903Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.266019Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.266091Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.266413Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.266643Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.266780Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.266842Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.266951Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267015Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267127Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267220Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267331Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267390Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267502Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267564Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.267755Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268090Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268199Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268263Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268375Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268438Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268625Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268694Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268801Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268869Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.268978Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.269041Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.269172Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.269255Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.269639Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.270020Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.270128Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.270197Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.270306Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.270366Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.270474Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.270539Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.286092Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.286410Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.286576Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.287521Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.287654Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.287748Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.287823Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.287934Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.288006Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.288064Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.304177Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.304828Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.306265Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.308339Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.308687Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T23:55:48.309139Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.309528Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.311791Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.312172Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T23:55:48.312706Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.313798Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.316187Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T23:55:48.321175Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T23:55:48.322128Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T23:55:48.325527Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T23:55:48.327200Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T23:55:48.328633Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T23:55:48.430384Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.430482Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.430514Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.431273Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.431668Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.432156Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.436684Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T23:55:48.438496Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T23:55:48.439514Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T23:55:48.599209Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.600020Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.603131Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T23:55:49.466461Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.467610Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.471272Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T23:55:49.733014Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.733113Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.733996Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.734462Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.739883Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T23:55:49.783615Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T23:55:49.801618Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.801717Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.802559Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.802820Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.807431Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T23:55:49.808590Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T23:55:49.867635Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.869111Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.875030Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T23:55:49.878891Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.879991Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.883944Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T23:55:49.944565Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.945667Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.950327Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T23:55:49.950709Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.951686Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955518Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T23:55:50.066799Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.068191Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.071894Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T23:55:50.183501Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.184956Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.189389Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T23:55:50.250394Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.251771Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.256523Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T23:55:50.768829Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.770198Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.773801Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T23:55:50.835114Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.836337Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.840255Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T23:55:50.901686Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.902994Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907709Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T23:55:50.911555Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.912673Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.916740Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T23:55:50.977668Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.978742Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.982292Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T23:55:50.987199Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.987957Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.991382Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T23:55:51.052283Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.052428Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.053636Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.053980Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.058381Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T23:55:51.059203Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:51.071047Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.072288Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.075578Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T23:55:51.136656Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.136794Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.136840Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.137698Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.138027Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.138372Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.143430Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T23:55:51.145402Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T23:55:51.146499Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T23:55:51.203798Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.204953Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.209416Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T23:55:51.237846Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.239238Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.243946Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T23:55:51.247889Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.248616Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.252012Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T23:55:51.312737Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.312848Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.313792Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.314365Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.319309Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T23:55:51.320282Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T23:55:51.380167Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.381430Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.385375Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T23:55:51.446301Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.446984Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.450980Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T23:55:51.511773Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.512676Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.517137Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T23:55:51.577979Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.579098Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.583177Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T23:55:51.694670Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.695919Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.700323Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T23:55:51.761668Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.762364Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.766143Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T23:55:51.795066Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.796486Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.800820Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T23:55:51.805402Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.806861Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.810930Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T23:55:51.872063Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.872229Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.873154Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.873528Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.878778Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T23:55:51.929106Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T23:55:51.939635Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.939756Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.940395Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.940848Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.944628Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T23:55:51.945217Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:52.005796Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.005925Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.006570Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.006911Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.010749Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:52.011958Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T23:55:52.071793Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.072426Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.075575Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T23:55:52.136967Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.251603Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.252326Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.256463Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T23:55:52.317022Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.381482Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.382167Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.386303Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T23:55:52.447549Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.512101Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.513266Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.517586Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T23:55:52.578444Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.893518Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.894175Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.897755Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T23:55:52.958750Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.073223Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.073948Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.077557Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T23:55:53.138847Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.454738Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.455541Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.458786Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T23:55:53.520253Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.637685Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.638253Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.641145Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T23:55:54.702666Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.703016Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.703236Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.703660Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.704140Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.709709Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:54.711086Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:54.712152Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:54.768839Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.768946Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.768973Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.769296Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.769714Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.772930Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:54.773779Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:54.802461Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.806094Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.806399Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.809475Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:54.838714Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.814922Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:07.139538Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:07.139538Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] 
[2026-05-27T23:56:07.139538Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:07.139623Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] 
[2026-05-27T23:56:07.139630Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:07.139637Z] [nf-87474c51404eff25cd7dcf2bd793cfe8-5a774-xwshs] [657_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec