cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.1s, est remaining 1.2s, peak mem 79MB, user 0.1s, sys 0.1s, output queue size 2287
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 1.0s, peak mem 88MB, user 0.1s, sys 0.2s, output queue size 2384
progress 15% @chr15:63912108, elapsed 0.2s, est remaining 0.9s, peak mem 97MB, user 0.1s, sys 0.3s, output queue size 5007
progress 20% @chr15:87980531, elapsed 0.2s, est remaining 0.8s, peak mem 108MB, user 0.1s, sys 0.5s, output queue size 7293
progress 25% @chr16:1947194, elapsed 0.2s, est remaining 0.7s, peak mem 114MB, user 0.1s, sys 0.6s, output queue size 8978
progress 30% @chr16:23525127, elapsed 0.3s, est remaining 0.7s, peak mem 120MB, user 0.2s, sys 0.7s, output queue size 11458
progress 35% @chr16:66558190, elapsed 0.3s, est remaining 0.6s, peak mem 130MB, user 0.2s, sys 0.8s, output queue size 14061
progress 40% @chr16:89286670, elapsed 0.4s, est remaining 0.6s, peak mem 142MB, user 0.2s, sys 1.0s, output queue size 16537
progress 45% @chr17:10019777, elapsed 0.4s, est remaining 0.5s, peak mem 153MB, user 0.3s, sys 1.1s, output queue size 19149
progress 50% @chr17:36333876, elapsed 0.5s, est remaining 0.5s, peak mem 165MB, user 0.3s, sys 1.3s, output queue size 21752
progress 55% @chr17:45115344, elapsed 0.5s, est remaining 0.4s, peak mem 169MB, user 0.4s, sys 1.4s, output queue size 23989
progress 60% @chr17:68440701, elapsed 0.6s, est remaining 0.4s, peak mem 180MB, user 0.4s, sys 1.6s, output queue size 26532
progress 65% @chr18:5960094, elapsed 0.6s, est remaining 0.3s, peak mem 196MB, user 0.4s, sys 1.8s, output queue size 29241
progress 70% @chr18:62574057, elapsed 0.7s, est remaining 0.3s, peak mem 207MB, user 0.4s, sys 1.9s, output queue size 31614
progress 75% @chr19:6921713, elapsed 0.7s, est remaining 0.2s, peak mem 217MB, user 0.5s, sys 2.0s, output queue size 34007
progress 80% @chr19:11780019, elapsed 0.8s, est remaining 0.2s, peak mem 223MB, user 0.5s, sys 2.1s, output queue size 36269
progress 85% @chr19:36937147, elapsed 0.8s, est remaining 0.1s, peak mem 231MB, user 0.5s, sys 2.3s, output queue size 38581
progress 90% @chr19:46493558, elapsed 0.9s, est remaining 0.1s, peak mem 241MB, user 0.6s, sys 2.4s, output queue size 1736
progress 95% @chr20:36916678, elapsed 0.9s, est remaining 0.0s, peak mem 253MB, user 0.6s, sys 2.6s, output queue size 4373
progress 100% @chr20:64199892, elapsed 1.0s, est remaining 0.0s, peak mem 264MB, user 0.6s, sys 2.7s, output queue size 6812
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586797
output file size: 22311
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.011 sys 0.018 real
advance: 49760 calls 0.004 user 0.002 sys 0.025 real
calc: 97912 calls 0.007 user 0.000 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.003 sys 2.904 real
fetch: 97912 calls 0.001 user 0.006 sys 0.019 real
fetch_ref: 97912 calls 0.054 user 0.035 sys 0.369 real
idle: 51 calls 0.004 user 0.002 sys 35.728 real
init: 1 calls 0.051 user 0.009 sys 0.055 real
region: 97912 calls 0.005 user 0.000 sys 0.022 real
tracker: 97912 calls 0.013 user 0.012 sys 0.100 real
overall: 277053440 mem 1.277 user 4.655 sys 4.054 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory