Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/2deabb04542eafda1bfc9f3e802593/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/c4ab70cd0462681d725647f4082e13/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/c4ab70cd0462681d725647f4082e13/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/2deabb04542eafda1bfc9f3e802593/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T23:55:48.810191Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.811050Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.811060Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.811065Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.811069Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXSgCorw'
[2026-05-27T23:55:48.811073Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.811078Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.811082Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.811086Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-05-27T23:55:48.811090Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.811094Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.811098Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.811104Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.811108Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.811452Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.811546Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.818346Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.819034Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.819108Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.819331Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.819541Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.820259Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.820370Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.820455Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.820591Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.820758Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.821150Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.821207Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.821433Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.823315Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.823518Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.823588Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.823982Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824077Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824206Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824279Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824404Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824473Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824593Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824663Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824855Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824927Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825050Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825143Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825362Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825774Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825907Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825977Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826095Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826167Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826283Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826367Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826489Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826559Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826677Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826745Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827386Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827465Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827584Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827663Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827782Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827850Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827969Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.828042Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.828160Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.828228Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.828349Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.828420Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.828940Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.829286Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.829646Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830051Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830173Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830240Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830361Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830432Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830554Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830628Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830743Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830810Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830928Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.830994Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.831294Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.831741Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.831858Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.831934Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832050Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832116Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832233Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832302Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832420Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832488Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832603Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832693Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.848867Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.849113Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.849343Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.849542Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.850684Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.850895Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.851195Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.851459Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.851976Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.852320Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.852540Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.853082Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.853638Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.853973Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.854229Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.855067Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.855356Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.856113Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.856880Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.860114Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:48.866866Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T23:55:48.867325Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T23:55:48.870111Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:48.875009Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:48.876369Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:48.879603Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:48.880959Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T23:55:48.986218Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.986303Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.986343Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.987453Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.987709Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.988133Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.994262Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T23:55:48.995662Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:48.997043Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T23:55:49.653464Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.654693Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.657833Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T23:55:50.420237Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.421437Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.424381Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:50.485372Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.486571Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.489499Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:50.550488Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.550594Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.551729Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.552183Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.555964Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:50.556937Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:50.586291Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.587152Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.590045Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T23:55:50.590943Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.591979Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.594641Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T23:55:50.607707Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.608776Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.611804Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T23:55:50.640517Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.641620Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.644685Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T23:55:50.705837Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.707016Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.710381Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:50.771424Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.772375Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.775525Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T23:55:50.836857Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.838018Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.840820Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T23:55:50.901963Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.902047Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.902915Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.903319Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.906358Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T23:55:50.907375Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T23:55:50.967453Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.967528Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.968461Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.968911Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.972328Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T23:55:50.973332Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T23:55:51.033200Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.034019Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.036734Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T23:55:51.098149Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.099035Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.102189Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T23:55:51.115445Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.116258Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.119025Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T23:55:51.148105Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.148939Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.151924Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:51.213095Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.214142Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.217236Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T23:55:51.628779Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.629589Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.632777Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T23:55:51.794152Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.795249Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.798101Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T23:55:51.827212Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.828274Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.831621Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:51.892489Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.893525Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.896588Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T23:55:52.208412Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.209539Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.212401Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T23:55:52.273684Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.274725Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.277484Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T23:55:52.290619Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.291546Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.294182Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:52.355724Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.356522Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.359435Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T23:55:52.871822Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.872648Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.875566Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T23:55:52.889874Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.890548Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.893727Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T23:55:52.894490Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.895164Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.897491Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T23:55:52.910987Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.911827Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.914514Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:52.943726Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.944993Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.945330Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.948018Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.948704Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T23:55:52.950819Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:53.012098Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.012194Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.013012Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.013451Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.016813Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T23:55:53.017890Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T23:55:53.178032Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.179067Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.182562Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T23:55:53.243537Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.244474Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.247846Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T23:55:53.459199Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.460197Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.462834Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T23:55:53.492233Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.493022Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.495768Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T23:55:53.557079Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.557930Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.560819Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:53.672132Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.673060Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.676016Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:53.737292Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.738212Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.741575Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T23:55:53.902658Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.903290Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.906706Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T23:55:54.218216Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.219104Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.222440Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:54.283240Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.284089Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.286860Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T23:55:54.348026Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.348814Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.352533Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T23:55:54.413415Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.414384Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.417406Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:54.478399Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.479281Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.482180Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:54.543273Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.544059Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.546587Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:54.608217Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.608852Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.611957Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T23:55:54.641198Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.641988Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.644776Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T23:55:54.705994Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.706641Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.709246Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:54.820783Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.821423Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.824457Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T23:55:54.853522Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.067904Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.068626Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.071708Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T23:55:55.132787Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.597756Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.598467Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.601365Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T23:55:55.662404Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.662490Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.663180Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.665593Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T23:55:55.727069Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.091733Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.092392Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.095096Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:56.124483Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.188525Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.189154Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.191905Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T23:55:56.221003Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.252962Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.253544Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.256192Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T23:55:56.317586Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.834151Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.834703Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.837225Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:57.898796Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.899142Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.899347Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.899645Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.900263Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.903889Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:57.905587Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:57.906046Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:57.933931Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.934011Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.934037Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.934257Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.934464Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.936795Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:57.937556Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:57.966950Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.967028Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.967222Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.969498Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:58.031160Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.447759Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:07.699115Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:07.699115Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] 
[2026-05-27T23:56:07.699115Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:07.699196Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] 
[2026-05-27T23:56:07.699211Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:07.699221Z] [nf-a42deabb04542eafda1bfc9f3e802593-82a00-xpvpp] [716_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec