cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:156000001, elapsed 0.2s, est remaining 3.4s, peak mem 338MB, user 1.4s, sys 3.5s, output queue size 5
progress 10% @chr2:67000001, elapsed 0.3s, est remaining 2.9s, peak mem 559MB, user 2.7s, sys 6.7s, output queue size 41
progress 15% @chr2:239000001, elapsed 0.5s, est remaining 2.7s, peak mem 629MB, user 4.1s, sys 9.9s, output queue size 5
progress 20% @chr3:143000001, elapsed 0.6s, est remaining 2.5s, peak mem 751MB, user 5.3s, sys 13.1s, output queue size 10
progress 25% @chr4:115000001, elapsed 0.8s, est remaining 2.3s, peak mem 873MB, user 6.4s, sys 16.5s, output queue size 10
progress 30% @chr5:92000001, elapsed 0.9s, est remaining 2.1s, peak mem 953MB, user 7.6s, sys 19.7s, output queue size 27
progress 35% @chr6:67000001, elapsed 1.1s, est remaining 2.0s, peak mem 985MB, user 8.9s, sys 23.0s, output queue size 5
progress 40% @chr7:60000001, elapsed 1.2s, est remaining 1.8s, peak mem 1035MB, user 10.0s, sys 26.1s, output queue size 10
progress 45% @chr8:59000001, elapsed 1.3s, est remaining 1.6s, peak mem 1098MB, user 11.1s, sys 29.5s, output queue size 65
progress 50% @chr9:67000001, elapsed 1.5s, est remaining 1.5s, peak mem 1231MB, user 12.3s, sys 32.7s, output queue size 8
progress 55% @chr10:98000001, elapsed 1.6s, est remaining 1.3s, peak mem 1285MB, user 13.3s, sys 36.1s, output queue size 13
progress 60% @chr11:127000001, elapsed 1.8s, est remaining 1.2s, peak mem 1324MB, user 14.2s, sys 40.0s, output queue size 7
progress 65% @chr13:17000001, elapsed 2.0s, est remaining 1.1s, peak mem 1391MB, user 15.7s, sys 43.8s, output queue size 20
progress 70% @chr14:71000001, elapsed 2.1s, est remaining 0.9s, peak mem 1487MB, user 17.2s, sys 47.8s, output queue size 5
progress 75% @chr15:98000001, elapsed 2.3s, est remaining 0.8s, peak mem 1524MB, user 19.0s, sys 51.1s, output queue size 17
progress 80% @chr18:12000001, elapsed 2.5s, est remaining 0.6s, peak mem 1545MB, user 20.8s, sys 54.6s, output queue size 5
progress 85% @chr20:8000001, elapsed 2.7s, est remaining 0.5s, peak mem 1592MB, user 22.5s, sys 58.2s, output queue size 14
progress 90% @chrX:38000001, elapsed 3.6s, est remaining 0.4s, peak mem 2822MB, user 32.2s, sys 61.5s, output queue size 114
progress 95% @chrY:35000001, elapsed 3.9s, est remaining 0.2s, peak mem 2843MB, user 39.5s, sys 63.6s, output queue size 276
progress 100% @chr21:41000001, elapsed 6.2s, est remaining 0.0s, peak mem 2858MB, user 63.7s, sys 67.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 00050657
  features: 1f8bfbff fffa3203
  extended: d19f47ab 00000018
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 31 max 64
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290594
output file size: 74586797
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.027 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.011 real
advance: 3219322 calls 5.491 user 8.353 sys 14.124 real
done: 1 calls 0.505 user 0.489 sys 0.998 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.000 sys 6.318 real
fetch: 3219322 calls 2.176 user 7.115 sys 9.648 real
fetch_reads: 3219322 calls 2.511 user 7.436 sys 10.083 real
fetch_ref: 13318 calls 0.122 user 0.055 sys 0.153 real
fetch_vcf: 13318 calls 2.683 user 0.144 sys 2.921 real
idle: 2120 calls 4.381 user 0.218 sys 110.588 real
init: 1 calls 0.008 user 0.010 sys 0.033 real
update: 13537 calls 18.127 user 2.741 sys 22.394 real
write: 3219322 calls 15.279 user 8.762 sys 23.511 real
overall: 2998226944 mem 76.120 user 68.426 sys 8.802 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 00050657
  features: 1f8bfbff fffa3203
  extended: d19f47ab 00000018
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 31 max 64
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.042 user 0.000 sys 0.046 real
done: 1 calls 0.079 user 0.024 sys 0.105 real
idle: 61 calls 0.001 user 0.000 sys 31.473 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 84418560 mem 0.108 user 0.071 sys 1.069 real