[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgFhSq5/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgFhSq5/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgFhSq5/chr4_22420786-22421189.bed.gz.tbi
[2026-05-27T23:55:48.629308Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.631165Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.631179Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.631184Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.631193Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgFhSq5'
[2026-05-27T23:55:48.631198Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.631204Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.631210Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.631214Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:48.631218Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.631225Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.631229Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.631233Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.631240Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.631857Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.631982Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.639145Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.639896Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.640133Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.640506Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.640837Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.641311Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.641409Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.641482Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.641600Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.641667Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.641790Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.641867Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.642181Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.642444Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.642559Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.642867Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.643176Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.643702Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.643851Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.644054Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.644177Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.646338Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.646612Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.646958Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.647549Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.647633Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.647762Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.647867Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.647990Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648054Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648176Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648242Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648353Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648420Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648548Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648638Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648792Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.648953Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649329Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649403Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649524Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649594Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649719Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649784Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649896Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.649955Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.650067Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.650136Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.650239Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.650331Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.650527Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651001Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651120Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651192Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651302Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651392Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651505Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651566Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651675Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651759Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651872Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651944Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.652307Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.652711Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.652845Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.652906Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653021Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653083Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653187Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653258Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653371Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653431Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653542Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653606Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653723Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.653843Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.654467Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.654535Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.656269Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.656454Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657096Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657171Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657284Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657352Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657468Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657530Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657644Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657705Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657813Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657882Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.657996Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.658405Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659141Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659215Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659329Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659399Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659506Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659574Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659686Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.659752Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.676373Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.676523Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.676613Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.676846Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.677377Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.678209Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.678294Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.678442Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.678519Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.678578Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.687282Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.688208Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.688521Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.688982Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.689386Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.690030Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.691531Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.692374Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.693839Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.701381Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T23:55:48.702286Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:55:48.707587Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:48.708234Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:48.713133Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:55:48.714551Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T23:55:48.714892Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T23:55:49.733534Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T23:55:49.764733Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.764842Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.766341Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.766704Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.770669Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:50.534338Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.536463Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.540262Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T23:55:50.601283Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.603873Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.608271Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T23:55:51.103166Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T23:55:51.120653Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.122105Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.125909Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T23:55:51.387269Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.388843Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.393997Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T23:55:51.806429Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.809276Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.814093Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T23:55:51.842750Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.844267Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.849819Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T23:55:51.861017Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.863054Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.866513Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:51.895613Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.897212Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.897592Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.899186Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.902849Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:55:51.904109Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T23:55:51.933644Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.934984Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.938759Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T23:55:51.999547Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.000744Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.003702Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T23:55:52.065038Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.066503Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.070381Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:55:52.131482Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.131594Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.133025Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.133311Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.138242Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:55:52.139515Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T23:55:52.199089Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.201109Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.205939Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T23:55:52.218240Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.219857Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.223889Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:52.886496Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.887845Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.891354Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:53.354157Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.356109Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.356498Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.357896Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.361584Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T23:55:53.362408Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T23:55:53.422700Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.423781Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.427273Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T23:55:53.538445Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.538552Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.538589Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.539920Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.540280Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.540981Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.544668Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T23:55:53.547697Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:55:53.608607Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.610084Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.613790Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T23:55:53.724913Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.726439Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.729888Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T23:55:53.790954Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.792294Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.795876Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T23:55:54.508490Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.509447Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.513744Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T23:55:54.574599Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.574695Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.575921Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.576287Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.579697Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T23:55:54.580515Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:54.641010Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.641111Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.642137Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.642453Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.646677Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T23:55:54.647866Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T23:55:54.707707Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.708918Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.712582Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:55:54.773902Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.775140Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.779206Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T23:55:54.808143Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.809640Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.813215Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T23:55:54.874384Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.875551Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.879676Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T23:55:54.991079Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.992240Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.996098Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:55.056906Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.057904Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.061837Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:55.102915Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T23:55:55.123336Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.124186Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.128191Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T23:55:55.132666Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.133915Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.136868Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:55.198061Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.199040Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.202648Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T23:55:55.263553Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.264495Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.267747Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:55.296828Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.297980Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.301647Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:55:55.314306Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.315515Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.318709Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T23:55:55.380009Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.381138Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.385321Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T23:55:55.446292Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.447360Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.451138Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:55:55.512349Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.513777Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.518377Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T23:55:55.729474Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.730494Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.734523Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T23:55:56.096269Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.097234Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.100975Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T23:55:56.161921Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.162852Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.166032Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:56.227256Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.228223Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.231461Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:55:56.493280Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.494626Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.498278Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T23:55:56.559355Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.560784Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.564855Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T23:55:56.726277Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.727280Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.730897Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T23:55:56.792070Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.792180Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.793021Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.793326Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.797656Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T23:55:56.828134Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T23:55:56.858603Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.859648Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.863226Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:55:56.974810Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.975819Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.979690Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T23:55:57.040740Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.041762Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.045305Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T23:55:57.106360Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.107320Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.111258Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T23:55:57.172040Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.173026Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.177154Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:55:57.589088Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.589998Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.592996Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T23:55:57.654386Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.655308Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.658930Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:55:57.720262Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.720961Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.724396Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T23:55:57.753322Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.754139Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.757339Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:55:57.818494Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.819266Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.822703Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:57.883909Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.883999Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.884703Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.885036Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.889138Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T23:55:57.890228Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T23:55:57.893829Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.894527Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.897321Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:55:57.958657Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.959438Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.962800Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T23:55:58.024309Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.025686Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.026036Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.027281Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.030222Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:55:58.031504Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:55:58.091598Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.092444Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.096319Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T23:55:58.357742Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.358719Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.361814Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T23:55:58.422947Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.423848Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.427229Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T23:55:58.455983Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.456886Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.460213Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T23:55:58.721909Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.721986Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.722576Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.722874Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.726485Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T23:55:58.726967Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:55:58.787364Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.787467Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.788285Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.788917Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.791998Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T23:55:58.793054Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:55:58.853416Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.853534Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.917771Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.918397Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.921317Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T23:55:58.926249Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.926766Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.929621Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T23:55:58.958876Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.960486Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.125257Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.125345Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.125929Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.126207Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.129143Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T23:55:59.130283Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T23:55:59.190621Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.190700Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.192233Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.192651Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.195493Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:55:59.256709Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.822575Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.823148Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.825613Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T23:55:59.855154Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.855546Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.855821Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.856473Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.856901Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.861502Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:59.862648Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:59.863694Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:59.889634Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.889698Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.889723Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.889959Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.890208Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.892761Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:59.893796Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:59.954342Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.954423Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.954665Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.957293Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:59.986589Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:07.606958Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:21.751013Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:21.751013Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] 
[2026-05-27T23:56:21.751013Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:21.751096Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] 
[2026-05-27T23:56:21.751105Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:21.751112Z] [nf-233cc58f3dc2e43ec8af2860facb9d7b-8e448-dfrf5] [733_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec