cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18634302, elapsed 0.1s, est remaining 1.1s, peak mem 78MB, user 0.0s, sys 0.2s, output queue size 2211
progress 10% @chr1:37764961, elapsed 0.1s, est remaining 1.1s, peak mem 85MB, user 0.1s, sys 0.3s, output queue size 1904
progress 15% @chr1:65405870, elapsed 0.2s, est remaining 1.1s, peak mem 91MB, user 0.1s, sys 0.5s, output queue size 4628
progress 20% @chr1:113837590, elapsed 0.3s, est remaining 1.0s, peak mem 103MB, user 0.1s, sys 0.6s, output queue size 7390
progress 25% @chr1:155248050, elapsed 0.3s, est remaining 0.9s, peak mem 111MB, user 0.1s, sys 0.8s, output queue size 9733
progress 30% @chr1:179348844, elapsed 0.4s, est remaining 0.8s, peak mem 123MB, user 0.2s, sys 0.9s, output queue size 12229
progress 35% @chr1:209796348, elapsed 0.4s, est remaining 0.8s, peak mem 129MB, user 0.2s, sys 1.1s, output queue size 14635
progress 40% @chr1:247100374, elapsed 0.5s, est remaining 0.7s, peak mem 139MB, user 0.2s, sys 1.2s, output queue size 17050
progress 45% @chr2:32549313, elapsed 0.5s, est remaining 0.6s, peak mem 148MB, user 0.2s, sys 1.4s, output queue size 19332
progress 50% @chr2:74460221, elapsed 0.6s, est remaining 0.6s, peak mem 159MB, user 0.3s, sys 1.5s, output queue size 21819
progress 55% @chr2:113499257, elapsed 0.6s, est remaining 0.5s, peak mem 168MB, user 0.3s, sys 1.7s, output queue size 24351
progress 60% @chr2:171006474, elapsed 0.7s, est remaining 0.4s, peak mem 181MB, user 0.3s, sys 1.8s, output queue size 27050
progress 65% @chr2:202757213, elapsed 0.7s, est remaining 0.4s, peak mem 189MB, user 0.3s, sys 2.0s, output queue size 29320
progress 70% @chr2:233772261, elapsed 0.8s, est remaining 0.3s, peak mem 199MB, user 0.4s, sys 2.2s, output queue size 31796
progress 75% @chr3:25612515, elapsed 0.8s, est remaining 0.3s, peak mem 208MB, user 0.4s, sys 2.3s, output queue size 34020
progress 80% @chr3:49807736, elapsed 0.9s, est remaining 0.2s, peak mem 217MB, user 0.5s, sys 2.4s, output queue size 36494
progress 85% @chr3:101859272, elapsed 0.9s, est remaining 0.2s, peak mem 223MB, user 0.5s, sys 2.6s, output queue size 39129
progress 90% @chr3:140546515, elapsed 1.0s, est remaining 0.1s, peak mem 238MB, user 0.5s, sys 2.7s, output queue size 41739
progress 95% @chr3:188524665, elapsed 1.0s, est remaining 0.1s, peak mem 249MB, user 0.5s, sys 2.8s, output queue size 44140
progress 100% @chr4:23824463, elapsed 1.1s, est remaining 0.0s, peak mem 258MB, user 0.6s, sys 2.9s, output queue size 46371
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586797
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.005 sys 0.019 real
advance: 51084 calls 0.000 user 0.006 sys 0.027 real
calc: 100735 calls 0.000 user 0.000 sys 0.019 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.001 sys 3.075 real
fetch: 100735 calls 0.002 user 0.002 sys 0.019 real
fetch_ref: 100735 calls 0.044 user 0.048 sys 0.438 real
idle: 51 calls 0.003 user 0.018 sys 36.397 real
init: 1 calls 0.039 user 0.004 sys 0.051 real
region: 100735 calls 0.001 user 0.000 sys 0.021 real
tracker: 100735 calls 0.012 user 0.004 sys 0.109 real
overall: 273940480 mem 1.241 user 5.605 sys 4.212 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory