Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/73bca1ba80c4b143f06a4c975cd378/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/13cddc5d2dfc35d00b1ee008db67d6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/13cddc5d2dfc35d00b1ee008db67d6/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7n6qhtyr because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-28 00:01:05,006 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-28 00:01:05,821 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-28 00:01:05,994 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-28 00:01:06,940 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-28 00:01:07,113 - cnv_pipe.batch.run_model - INFO - Processing cluster 840 with 199 probes
2026-05-28 00:01:07,494 - cnv_pipe.batch.run_model.cluster840 - INFO - Child process started for cluster 840 with 199 probes
2026-05-28 00:02:05,105 - cnv_pipe.batch.run_model.cluster840 - INFO - Child process finished cluster 840. Wrote cluster_840_samples.csv and cluster_840_params.csv
2026-05-28 00:02:05,106 - cnv_pipe.batch.run_model - INFO - Cluster 840 finished in 57.99 seconds. Status: SUCCESS