cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval germline_rescue_targets.bed -i Sig_18_Blood.recalibrated.bam --algo Haplotyper --given germline_control_2.dv_only_sites.vcf.gz --emit_mode variant germline_control_2.forcecall.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:47369312, elapsed 0.0s, est remaining 0.4s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 122
progress 10% @chr2:214787816, elapsed 0.0s, est remaining 0.2s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 241
progress 15% @chr2:58164031, elapsed 0.0s, est remaining 0.2s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 325
progress 20% @chr5:112834929, elapsed 0.0s, est remaining 0.1s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 506
progress 25% @chr7:55019018, elapsed 0.0s, est remaining 0.1s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 641
progress 30% @chr7:55204953, elapsed 0.0s, est remaining 0.1s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 676
progress 35% @chr9:21970761, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 124
progress 40% @chr10:43111197, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 269
progress 45% @chr11:64803513, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 385
progress 50% @chr12:11770919, elapsed 0.1s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 569
progress 55% @chr12:11796959, elapsed 0.1s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 581
progress 60% @chr12:11855326, elapsed 0.1s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 596
progress 65% @chr12:132664369, elapsed 0.1s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 662
progress 70% @chr14:68594702, elapsed 0.1s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 868
progress 75% @chr15:89311648, elapsed 0.1s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 995
progress 80% @chr17:7679679, elapsed 0.1s, est remaining 0.0s, peak mem 52MB, user 0.0s, sys 0.0s, output queue size 1227
progress 85% @chr17:39547687, elapsed 0.1s, est remaining 0.0s, peak mem 52MB, user 0.1s, sys 0.0s, output queue size 1410
progress 90% @chr17:61681285, elapsed 0.1s, est remaining 0.0s, peak mem 54MB, user 0.1s, sys 0.0s, output queue size 1511
progress 95% @chr19:52190038, elapsed 0.1s, est remaining 0.0s, peak mem 54MB, user 0.1s, sys 0.1s, output queue size 1694
progress 100% @chr21:34787802, elapsed 0.1s, est remaining 0.0s, peak mem 87MB, user 0.1s, sys 0.1s, output queue size 124
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586797
output file size: 22314
reads: 1001133
contig: 2712 intervals 851273 bases
active: 5761 calls 0.000 user 0.000 sys 0.002 real
advance: 3049 calls 0.059 user 0.038 sys 0.108 real
calc: 5761 calls 0.000 user 0.000 sys 0.019 real
clip_region: 7 calls 0.000 user 0.000 sys 0.002 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.001 sys 0.151 real
fetch: 5761 calls 0.002 user 0.001 sys 0.008 real
fetch_ref: 5768 calls 0.000 user 0.000 sys 0.023 real
fetch_region: 7 calls 0.000 user 0.000 sys 0.001 real
idle: 24 calls 0.006 user 0.005 sys 12.701 real
init: 1 calls 0.000 user 0.000 sys 0.002 real
region: 5761 calls 0.000 user 0.000 sys 0.004 real
tracker: 5761 calls 0.000 user 0.000 sys 0.006 real
overall: 91484160 mem 0.242 user 0.254 sys 1.198 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory