cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:101760685, elapsed 0.1s, est remaining 1.5s, peak mem 90MB, user 0.1s, sys 0.3s, output queue size 2091
progress 10% @chr15:40902616, elapsed 0.1s, est remaining 1.3s, peak mem 100MB, user 0.2s, sys 0.6s, output queue size 4326
progress 15% @chr15:63911908, elapsed 0.2s, est remaining 1.3s, peak mem 111MB, user 0.3s, sys 1.0s, output queue size 1562
progress 20% @chr15:87966131, elapsed 0.3s, est remaining 1.2s, peak mem 120MB, user 0.4s, sys 1.4s, output queue size 3853
progress 25% @chr16:1941257, elapsed 0.4s, est remaining 1.1s, peak mem 127MB, user 0.4s, sys 1.7s, output queue size 5534
progress 30% @chr16:23482923, elapsed 0.4s, est remaining 1.0s, peak mem 137MB, user 0.5s, sys 2.1s, output queue size 8012
progress 35% @chr16:66549938, elapsed 0.5s, est remaining 1.0s, peak mem 148MB, user 0.6s, sys 2.6s, output queue size 10616
progress 40% @chr16:89286670, elapsed 0.6s, est remaining 0.9s, peak mem 158MB, user 0.7s, sys 3.0s, output queue size 13092
progress 45% @chr17:10311103, elapsed 0.7s, est remaining 0.9s, peak mem 168MB, user 0.8s, sys 3.6s, output queue size 15708
progress 50% @chr17:36329856, elapsed 0.8s, est remaining 0.8s, peak mem 178MB, user 1.0s, sys 3.9s, output queue size 18306
progress 55% @chr17:45149191, elapsed 0.9s, est remaining 0.7s, peak mem 187MB, user 1.1s, sys 4.3s, output queue size 20564
progress 60% @chr17:68347125, elapsed 1.0s, est remaining 0.7s, peak mem 198MB, user 1.2s, sys 4.8s, output queue size 23076
progress 65% @chr18:5890198, elapsed 1.1s, est remaining 0.6s, peak mem 208MB, user 1.3s, sys 5.4s, output queue size 25796
progress 70% @chr18:62715684, elapsed 1.2s, est remaining 0.5s, peak mem 217MB, user 1.4s, sys 5.9s, output queue size 28175
progress 75% @chr19:6921713, elapsed 1.3s, est remaining 0.4s, peak mem 229MB, user 1.5s, sys 6.4s, output queue size 30561
progress 80% @chr19:15247048, elapsed 1.3s, est remaining 0.3s, peak mem 237MB, user 1.5s, sys 6.8s, output queue size 32820
progress 85% @chr19:36996317, elapsed 1.4s, est remaining 0.3s, peak mem 245MB, user 1.6s, sys 7.2s, output queue size 35141
progress 90% @chr19:46469733, elapsed 1.5s, est remaining 0.2s, peak mem 253MB, user 1.7s, sys 7.6s, output queue size 37311
progress 95% @chr20:36912423, elapsed 1.6s, est remaining 0.1s, peak mem 264MB, user 1.8s, sys 8.2s, output queue size 39942
progress 100% @chr20:64273221, elapsed 1.7s, est remaining 0.0s, peak mem 274MB, user 1.9s, sys 8.7s, output queue size 42382
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 00050657
  features: 1f8bfbff fffa3203
  extended: d19f47ab 00000018
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 12 max 64
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692772
output file size: 22308
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.018 user 0.026 sys 0.060 real
advance: 49760 calls 0.026 user 0.033 sys 0.060 real
calc: 97912 calls 0.020 user 0.002 sys 0.060 real
done: 1 calls 0.000 user 0.001 sys 0.003 real
execute: 1 calls 0.001 user 0.010 sys 3.199 real
fetch: 97912 calls 0.062 user 0.001 sys 0.062 real
fetch_ref: 97912 calls 0.325 user 0.169 sys 0.707 real
idle: 51 calls 0.005 user 0.007 sys 30.795 real
init: 1 calls 0.058 user 0.010 sys 0.067 real
region: 97912 calls 0.043 user 0.004 sys 0.067 real
tracker: 97912 calls 0.127 user 0.019 sys 0.219 real
overall: 291737600 mem 2.953 user 12.086 sys 4.391 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory