Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/73bca1ba80c4b143f06a4c975cd378/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/d3a75c7d6755c166386b0bcfc8f1aa/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/d3a75c7d6755c166386b0bcfc8f1aa/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-loo9y8gk because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-28 00:01:47,052 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-28 00:01:48,214 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-28 00:01:48,438 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-28 00:01:49,839 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-28 00:01:50,096 - cnv_pipe.batch.run_model - INFO - Processing cluster 984 with 145 probes
2026-05-28 00:01:50,640 - cnv_pipe.batch.run_model.cluster984 - INFO - Child process started for cluster 984 with 145 probes
2026-05-28 00:03:03,025 - cnv_pipe.batch.run_model.cluster984 - INFO - Child process finished cluster 984. Wrote cluster_984_samples.csv and cluster_984_params.csv
2026-05-28 00:03:03,027 - cnv_pipe.batch.run_model - INFO - Cluster 984 finished in 72.93 seconds. Status: SUCCESS