Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/2acc6aacc6a3882b6266388724791f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/c0a67c1d98a52e016e1ee4b829f9ba/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/c0a67c1d98a52e016e1ee4b829f9ba/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/2acc6aacc6a3882b6266388724791f/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T23:55:47.579415Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:47.595123Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:47.595153Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:47.595160Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:47.595165Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXZCEtmL'
[2026-05-27T23:55:47.595171Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:47.595179Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:47.595185Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:47.595193Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:47.595199Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:47.595206Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:47.595211Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:47.595218Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:47.595224Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:47.595696Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:47.595801Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:47.602224Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:47.602994Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:47.603145Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:47.603431Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:47.603727Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.605238Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.605475Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.605667Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.606408Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.607080Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.609234Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.609725Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:47.609973Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.610283Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.610488Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.610592Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.610774Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.610877Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.611057Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.611162Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.611635Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.611916Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.612101Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.612203Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.612471Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.612576Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.612754Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.612864Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.613278Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.613721Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.613930Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.614041Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.614226Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.614338Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.614516Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.614664Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.615032Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.615473Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.615648Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.615751Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.615922Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.616023Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.616192Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.616285Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.616625Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.617155Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.617352Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.617467Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.617648Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.617749Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.617956Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.618189Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.618615Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.619203Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.619391Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.619504Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.619688Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.619790Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.619964Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.620065Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.641627Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.642313Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.642547Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.642701Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.643713Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.643895Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.644063Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.644391Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.644726Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.645246Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.645597Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.646038Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.646994Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.647585Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.648348Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.648872Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.650778Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.651243Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:47.651853Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.654756Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T23:55:47.659845Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T23:55:47.662472Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T23:55:47.668791Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:47.669532Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T23:55:47.672347Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:47.676539Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:47.761490Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T23:55:47.781344Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.781418Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.781457Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.782225Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.782578Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.783017Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.787930Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:47.790046Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T23:55:47.790955Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T23:55:47.850689Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.851796Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.855743Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T23:55:47.868505Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.869492Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.872066Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T23:55:49.036063Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.036806Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.040123Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T23:55:49.101099Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.101950Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.106663Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:49.218230Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.219228Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.222598Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T23:55:49.283646Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.284638Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.287729Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T23:55:49.348924Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.349971Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.353670Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T23:55:49.382788Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.383746Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.387328Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T23:55:49.448233Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.449081Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.452788Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T23:55:50.215707Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.216522Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.220003Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T23:55:50.331155Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.332089Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.335294Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T23:55:50.396218Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.396314Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.397176Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.397464Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.401454Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T23:55:50.402643Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T23:55:50.462472Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.463355Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.466507Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T23:55:50.527640Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.528653Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.532291Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T23:55:51.395583Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.396614Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.400459Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T23:55:51.461355Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.462287Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.465782Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T23:55:52.127854Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.128594Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.132413Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T23:55:52.193505Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.194649Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.198976Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:52.203462Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.204526Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.208114Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T23:55:52.269407Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.270632Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.274493Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T23:55:52.279040Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.279958Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.283602Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:52.344378Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.344481Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.345301Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.345578Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.349490Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:52.350695Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T23:55:52.411416Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.411518Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.412269Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.412667Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.416484Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T23:55:52.419240Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T23:55:52.486768Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.487672Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.491426Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T23:55:52.554249Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.555188Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.559248Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:52.588554Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.590267Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.593714Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T23:55:52.598462Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.599342Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.603063Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T23:55:52.664024Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.664954Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.668682Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T23:55:52.729620Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.730418Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.734199Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T23:55:53.603493Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.604856Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.608686Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:53.613342Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.614069Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.617238Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T23:55:53.678817Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.678964Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.679683Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.680021Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.683245Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T23:55:53.684451Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T23:55:53.744415Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.744492Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.744517Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.745007Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.745470Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.749566Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T23:55:53.750706Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T23:55:53.812507Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.844739Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.845429Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.849354Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T23:55:53.910195Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.375284Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.375911Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.379691Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T23:55:54.440356Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.440457Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.441052Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.444718Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T23:55:54.505547Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.171308Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.173088Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.176736Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T23:55:55.239900Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.654910Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.655571Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.658939Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T23:55:55.720097Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.535907Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.536555Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.539304Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T23:55:56.568659Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.569012Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.569206Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.569429Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.569819Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.573600Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:56.575635Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:56.605341Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:56.635047Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.635141Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.635171Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.635479Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.635832Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.640045Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:56.640359Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:56.700328Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.700428Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.700717Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.706668Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:56.764930Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.232014Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:06.483689Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:06.483689Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] 
[2026-05-27T23:56:06.483689Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:06.483790Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] 
[2026-05-27T23:56:06.483799Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:06.483809Z] [nf-2f2acc6aacc6a3882b6266388724791f-b5aff-bxc62] [687_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec