File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/aa2c12f4ca368deedb8ae57972c020/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-27T23:55:48.397982Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.398602Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.398616Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.398620Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.398624Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX4QGpi6'
[2026-05-27T23:55:48.398628Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.398633Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.398637Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.398640Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:48.398644Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.398648Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.398652Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.398655Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.398659Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.399098Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.399202Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.404905Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.405449Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.405656Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.405955Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.406219Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.406907Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.407019Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.407096Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.407213Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.407373Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.407730Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.407861Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.407945Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.408185Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.408476Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.410533Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.411374Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.411588Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.412010Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.412246Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.412593Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.412797Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.413153Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.413631Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414129Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414368Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414495Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414566Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414705Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414769Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414893Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.414959Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.415070Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.415135Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.415244Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.415319Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.415539Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.415974Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416118Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416201Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416339Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416419Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416561Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416650Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416787Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416861Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.416991Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.417081Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.417386Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.417750Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.417867Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.417990Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418104Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418168Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418282Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418347Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418458Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418521Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418634Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418699Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.418873Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419331Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419441Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419503Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419613Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419674Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419788Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419851Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.419958Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.420031Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.420141Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.420203Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.420310Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.420881Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.421308Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.421377Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.421486Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.421552Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.435566Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.435684Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.435792Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.435971Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.436043Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.436132Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.436200Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.436310Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.436381Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.436429Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.442064Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.442721Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.442940Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.443387Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.443856Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.444198Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.444950Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.445765Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.447679Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.450031Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T23:55:48.456185Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:48.456947Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:48.459625Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:48.462959Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T23:55:48.464709Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T23:55:48.466234Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:48.467273Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:48.565825Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.565925Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.565973Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.567125Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.567484Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.567924Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.573057Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T23:55:48.574236Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T23:55:48.575732Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T23:55:49.084219Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.086021Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.090036Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T23:55:50.355681Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.356982Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.360851Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T23:55:50.389697Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.390667Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.395200Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T23:55:50.399286Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.400113Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.403325Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T23:55:50.514747Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.514864Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.515836Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.516208Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.520254Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T23:55:50.521696Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T23:55:50.581630Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.582780Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.586800Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T23:55:50.948642Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.949982Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.953764Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:51.014740Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.015641Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.020182Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:51.131087Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.132195Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.135858Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T23:55:51.598280Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.599223Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.602234Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:51.663628Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.664602Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.668268Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T23:55:51.729224Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.730452Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.734743Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:52.196877Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.198061Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.201824Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T23:55:52.262969Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.264121Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.269067Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T23:55:52.280818Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.282762Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.287497Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T23:55:52.347594Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.348782Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.352260Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T23:55:52.614047Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.614983Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.619382Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T23:55:52.680256Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.681198Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.684656Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:52.795900Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.797094Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.801717Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:52.862230Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.863382Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.867519Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T23:55:52.872089Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.873265Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.876996Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T23:55:52.905834Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.906980Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.910967Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:52.972020Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.974392Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.978478Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T23:55:53.089823Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.090858Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.094310Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:53.155625Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.156710Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.160408Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:53.372152Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.373141Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.376569Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T23:55:53.838853Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.839855Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.843236Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T23:55:53.872413Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.873356Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.876678Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T23:55:53.889658Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.890522Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.894236Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T23:55:53.907062Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.907761Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.911149Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:53.915911Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.916588Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.919512Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:53.924461Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.925342Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.928499Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T23:55:53.941444Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.942104Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.945487Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T23:55:53.974433Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.974555Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.975589Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.976065Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.979979Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T23:55:53.980960Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T23:55:54.292248Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.293194Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.296753Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T23:55:54.357978Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.359306Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.363075Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:54.424626Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.426376Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.429902Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T23:55:54.842432Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.844286Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.847871Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T23:55:54.909087Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.910006Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.913550Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T23:55:54.974740Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.975602Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.978667Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:55.040162Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.041782Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.045241Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:55.074605Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.075554Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.078645Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:55.108042Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.109109Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.112325Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:55.113190Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.114006Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.116855Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:55.146196Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.146992Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.150362Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T23:55:55.179410Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.180193Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.183864Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:55.244920Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.245768Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.248979Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:55.310446Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.311930Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.315465Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T23:55:55.376708Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.377548Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.381286Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T23:55:55.442444Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.443310Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.447171Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T23:55:55.758681Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.759457Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.763923Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T23:55:55.975270Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.976313Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.980367Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T23:55:56.041252Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.041994Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.046264Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T23:55:56.107238Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.322367Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.322929Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.326503Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T23:55:56.387511Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.502213Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.502883Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.506474Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T23:55:56.617634Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.932816Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.933526Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.937391Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:56.998403Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.464144Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.464766Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.467666Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T23:55:57.529147Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.643704Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.644335Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.647985Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T23:55:57.708964Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.174312Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.174399Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.174817Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.175118Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.178482Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T23:55:58.207849Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T23:55:58.239959Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.240047Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.240334Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.240518Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.240840Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.241232Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.246036Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.247515Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:58.248328Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.274488Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.275091Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.276388Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.278194Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.278531Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.279923Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.280922Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.342812Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.342926Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.343185Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.346054Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:58.375163Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.991149Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:07.286997Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:07.286997Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] 
[2026-05-27T23:56:07.286997Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:07.287081Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] 
[2026-05-27T23:56:07.287095Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:07.287103Z] [nf-1caa2c12f4ca368deedb8ae57972c020-a03c0-qb2ft] [674_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec