File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/c334af3df82a6e74e237ad2c3750d1/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

View in new tab 
[2026-05-27T23:55:48.766362Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.767128Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.767155Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.767162Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.767169Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXuFdYR7'
[2026-05-27T23:55:48.767191Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.767198Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.767202Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.767206Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:48.767211Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.767215Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.767221Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.767225Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.767233Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.767939Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.768093Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.774225Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.774869Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.775112Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.775404Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.775678Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776052Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776157Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776233Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776357Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776426Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776565Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776634Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776767Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.777024Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.777423Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.777544Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.777634Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.777907Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.777996Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.778133Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.778479Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779258Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.781795Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782554Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.782666Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782756Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782894Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782970Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783096Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783183Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783407Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783731Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783861Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783937Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784058Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784139Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784277Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784347Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784473Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784566Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784697Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784877Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785292Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785362Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785491Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785567Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785692Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785835Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786391Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786527Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787018Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787094Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787301Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787378Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787501Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787573Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787697Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787767Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787887Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.787962Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.788255Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.788709Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.788842Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.788919Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789042Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789111Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789233Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789301Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789415Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789491Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789608Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.789682Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805031Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805698Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805822Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.806037Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.806117Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.806217Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.806303Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808069Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808387Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.809007Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.814316Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.814969Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.815222Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.815696Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.816354Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.816873Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.817587Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.818420Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.819053Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826625Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T23:55:48.827358Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T23:55:48.830075Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:48.835139Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T23:55:48.837451Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:48.839295Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:48.840794Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T23:55:48.842637Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:48.936104Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.936245Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.937646Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.938358Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.943233Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:48.944146Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T23:55:49.706197Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.707326Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.710723Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T23:55:50.072880Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.074221Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.078146Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T23:55:50.490343Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.491318Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.495106Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T23:55:50.706697Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.708800Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.712576Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:51.626003Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.626109Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.626896Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.627377Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.631189Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T23:55:51.632914Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:51.692051Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.692176Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.693801Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.694286Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.699209Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T23:55:51.700335Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T23:55:52.361491Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.362555Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.366246Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:52.978503Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.979579Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.982898Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T23:55:53.044011Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.045326Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.048747Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:53.160495Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162025Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.165652Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T23:55:53.226632Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.228162Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.232010Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T23:55:53.293028Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.294241Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.298053Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T23:55:53.327216Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.328776Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.332592Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T23:55:53.345577Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.346631Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.350130Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T23:55:53.379026Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.379985Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.382327Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.383379Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T23:55:53.383488Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.387103Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T23:55:53.698656Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.699452Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.702680Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T23:55:53.764112Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.765204Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.768670Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T23:55:54.381132Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.381974Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.385076Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T23:55:54.385950Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.387025Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.390050Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:54.451394Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.453060Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.457156Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:54.518131Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.519680Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.523466Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T23:55:54.584548Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.584676Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.585601Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.586050Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.589486Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:54.590510Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:54.650410Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.651103Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.654248Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:54.715412Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.716158Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.719807Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T23:55:54.830929Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.831740Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.835155Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T23:55:54.896269Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.897039Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.899895Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:54.961141Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.961874Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.965208Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:55.076441Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.077161Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.080082Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:55.141390Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.142069Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.145291Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T23:55:55.206769Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.207513Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.210435Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T23:55:55.271729Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.272720Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.276433Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T23:55:55.337235Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.337981Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.341852Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T23:55:56.154743Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.155805Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.159240Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T23:55:56.220685Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.221713Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.225385Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:56.286237Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.286365Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.287211Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.287545Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.291002Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:56.292058Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:56.352053Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.352958Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.356879Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T23:55:56.385590Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.386554Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.390670Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T23:55:56.391535Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.392265Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.395151Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T23:55:56.408128Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.408903Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.411887Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T23:55:56.473237Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.473364Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.474204Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.474758Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.478927Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T23:55:56.479866Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T23:55:56.483344Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.484066Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.487361Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:56.548773Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.548884Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.549630Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.550019Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.554074Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T23:55:56.555084Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T23:55:56.582859Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.583619Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.586796Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:56.615973Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.616699Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.618866Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.619717Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T23:55:56.683255Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.449734Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.450447Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.453880Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:57.515136Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.679708Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.679802Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.680416Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.680755Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.684281Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T23:55:57.685105Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T23:55:57.745380Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.745484Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.260844Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.261447Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.264148Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:58.325576Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.991080Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.991653Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.994427Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T23:55:59.055778Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.621111Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.621695Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.624468Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T23:55:59.653617Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.653972Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.654155Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.654468Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.654700Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.659159Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:59.660551Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:59.661088Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:59.687043Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.687114Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.687142Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.687412Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.687642Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.690785Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:59.715467Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:59.719612Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.719680Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.719913Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.722606Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:59.751781Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:07.722603Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:21.886924Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:21.886924Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] 
[2026-05-27T23:56:21.886924Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:21.886998Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] 
[2026-05-27T23:56:21.887006Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:21.887013Z] [nf-1bc334af3df82a6e74e237ad2c3750d1-815a0-nzgn4] [729_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec