cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:87000001, elapsed 0.1s, est remaining 1.9s, peak mem 795MB, user 0.2s, sys 2.1s, output queue size 150
progress 10% @chr3:2000001, elapsed 0.2s, est remaining 1.7s, peak mem 795MB, user 0.4s, sys 9.4s, output queue size 311
progress 15% @chr3:76000001, elapsed 0.3s, est remaining 1.5s, peak mem 795MB, user 0.7s, sys 18.0s, output queue size 474
progress 20% @chr3:184000001, elapsed 0.4s, est remaining 1.5s, peak mem 795MB, user 0.8s, sys 27.0s, output queue size 635
progress 25% @chr4:158000001, elapsed 0.5s, est remaining 1.4s, peak mem 795MB, user 1.1s, sys 35.9s, output queue size 796
progress 30% @chr5:93000001, elapsed 0.5s, est remaining 1.2s, peak mem 795MB, user 1.3s, sys 45.2s, output queue size 958
progress 35% @chr7:115000001, elapsed 0.6s, est remaining 1.2s, peak mem 795MB, user 1.5s, sys 53.7s, output queue size 1119
progress 40% @chr8:114000001, elapsed 0.7s, est remaining 1.1s, peak mem 795MB, user 1.9s, sys 63.0s, output queue size 1281
progress 45% @chr10:1000001, elapsed 0.8s, est remaining 1.0s, peak mem 795MB, user 2.2s, sys 72.2s, output queue size 1442
progress 50% @chr10:19000001, elapsed 0.9s, est remaining 0.9s, peak mem 795MB, user 2.5s, sys 81.6s, output queue size 1603
progress 55% @chr11:4000001, elapsed 0.9s, est remaining 0.8s, peak mem 795MB, user 2.9s, sys 90.6s, output queue size 1765
progress 60% @chr14:37000001, elapsed 1.0s, est remaining 0.7s, peak mem 795MB, user 3.1s, sys 93.9s, output queue size 1926
progress 65% @chr12:4000001, elapsed 1.2s, est remaining 0.6s, peak mem 795MB, user 3.4s, sys 95.4s, output queue size 2087
progress 70% @chr18:31000001, elapsed 1.3s, est remaining 0.6s, peak mem 795MB, user 3.5s, sys 96.2s, output queue size 2249
progress 75% @chr13:19000001, elapsed 1.4s, est remaining 0.5s, peak mem 795MB, user 3.7s, sys 99.7s, output queue size 2331
progress 80% @chrX:77000001, elapsed 1.5s, est remaining 0.4s, peak mem 795MB, user 4.0s, sys 107.4s, output queue size 2492
progress 85% @chrY:26000001, elapsed 1.6s, est remaining 0.3s, peak mem 798MB, user 4.4s, sys 112.6s, output queue size 2682
progress 90% @chr19:13000001, elapsed 1.7s, est remaining 0.2s, peak mem 798MB, user 4.6s, sys 124.5s, output queue size 3141
progress 95% @chrX:72000001, elapsed 1.8s, est remaining 0.1s, peak mem 798MB, user 4.9s, sys 137.9s, output queue size 4128
progress 100% @HLA-B*81:01:1, elapsed 1.9s, est remaining 0.0s, peak mem 798MB, user 5.2s, sys 156.1s, output queue size 440
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 51111
output file size: 43430
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.013 real
"predict_filter": 171 calls 0.000 user 0.004 sys 0.036 real
advance: 3219322 calls 0.771 user 68.054 sys 76.773 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.008 sys 2.158 real
fetch_ref: 460 calls 0.001 user 0.019 sys 0.378 real
idle: 20712 calls 0.657 user 0.246 sys 888.432 real
init: 1 calls 0.485 user 0.182 sys 0.845 real
overall: 836898816 mem 6.906 user 161.900 sys 4.930 real