.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/42a29cee3706bb2a37b9a3a429e416/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

[2026-05-27T23:55:50.703724Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:50.704683Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:50.704708Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:50.704722Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:50.704740Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXZfR0Wu'
[2026-05-27T23:55:50.704756Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:50.704772Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:50.704783Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:50.704794Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] memMb: 510518
[2026-05-27T23:55:50.704804Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:50.704815Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:50.704825Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:50.704836Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:50.704847Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:50.705406Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:50.705630Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:50.716348Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:50.717241Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:50.717382Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:50.717691Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:50.718168Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.719148Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.719543Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.720040Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.720184Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.721115Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.721697Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.722137Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.722498Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.724654Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:50.725119Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.725584Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.725823Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.725952Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.726167Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.726294Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.726576Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.726872Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.727442Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.727572Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.727919Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.728059Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.728310Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.728660Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.729330Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.729462Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.729710Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.729841Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.730055Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.730214Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.730785Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.731407Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.731647Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.731775Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.731997Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.732125Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.732347Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.732748Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.733601Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.733745Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.733966Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.734092Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.734308Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.734448Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.734973Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.735739Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.735971Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.736213Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.736457Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.736592Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.737278Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.737990Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.738222Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.738365Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.738595Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.738763Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.739174Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.740097Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.740329Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.740460Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.740682Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.740805Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.741225Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.742264Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.742493Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.742636Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.742852Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.742981Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.743220Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.743621Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.744710Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.744848Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.745065Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.745192Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.747690Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.748748Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.749003Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.749140Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.749361Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.749502Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.749788Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.750230Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.751438Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.751569Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.751788Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.751921Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.752139Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.752433Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.753792Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.753937Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.754161Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.754292Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.754509Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.754639Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.755013Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.755437Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.790742Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.791954Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.792193Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.792524Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.794410Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.794809Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.795432Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.795841Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.796603Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.797224Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.797530Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.798835Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.799065Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.800141Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.801495Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.802213Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.802671Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.803193Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.805137Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:50.813245Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T23:55:50.814722Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:50.819024Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:50.824755Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T23:55:50.825400Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T23:55:50.830158Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T23:55:50.833071Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T23:55:50.835915Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T23:55:51.393340Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.394891Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.399089Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:52.511571Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.513131Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.517200Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T23:55:52.577812Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.579502Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.583459Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T23:55:52.694151Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.695913Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.699824Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T23:55:52.860694Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.862286Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.866323Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T23:55:52.977071Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.978677Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.982903Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T23:55:53.143772Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.145338Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.149391Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:53.410585Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.412950Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.417064Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T23:55:53.878579Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.880842Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.884032Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T23:55:53.945014Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.946523Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.950233Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T23:55:54.010916Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.012439Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.015913Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T23:55:54.227275Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.229672Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.233380Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T23:55:54.294215Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.295788Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.299698Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:54.360498Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.363093Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.367085Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T23:55:55.028821Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.030421Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.034504Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T23:55:55.094713Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.096176Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.100269Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T23:55:55.161096Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.163333Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.167337Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:55:55.478544Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.480007Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.483488Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T23:55:55.544376Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.545829Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.549642Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T23:55:55.710815Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.712083Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.715820Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:55.826598Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.826705Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.828064Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.828541Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.832885Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T23:55:55.834135Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:55.893598Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.895099Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.898958Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T23:55:56.460495Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.460655Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.462875Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.463407Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.468060Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T23:55:56.469664Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T23:55:56.496957Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.499257Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.503109Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T23:55:56.507780Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.509936Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.513219Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:56.574296Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.576512Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.580019Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T23:55:56.640984Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.643357Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.647516Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T23:55:57.059119Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.061376Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.064903Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T23:55:57.125985Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.127415Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.130735Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T23:55:57.191653Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.193002Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.196723Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:57.225504Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.226914Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.230233Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:57.291196Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.291304Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.292619Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.293004Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.296758Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T23:55:57.298510Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T23:55:57.357504Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.358987Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.362242Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:57.423189Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.424531Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.427998Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T23:55:58.089881Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.091257Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.094905Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T23:55:58.155619Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.156971Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.160745Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T23:55:58.321859Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.323280Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.326899Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:55:58.588303Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.590554Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.594338Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T23:55:58.655334Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.657396Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.661171Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:55:58.772399Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.774424Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.778182Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T23:55:58.838985Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.839101Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.841219Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.841741Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.845926Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T23:55:58.847443Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T23:55:58.906724Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.906899Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.908789Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.909354Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.913773Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T23:55:58.915462Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:55:58.974589Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.976749Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.980837Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:55:59.242082Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.243960Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.247527Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T23:55:59.308550Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.310597Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.314012Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:59.425182Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.427132Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.430586Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:59.443452Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.445312Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.448999Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T23:55:59.477712Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.479576Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.483462Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:55:59.495984Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.497733Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.502094Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:55:59.662607Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.663784Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.667584Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T23:56:00.078721Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.079859Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.083792Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T23:56:00.495114Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.496196Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.499775Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T23:56:00.660588Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.661694Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.665090Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T23:56:00.726004Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.726999Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.730638Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:56:00.791386Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.791480Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.792505Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.792819Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.797549Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:56:00.798638Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T23:56:01.057632Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.058732Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.062324Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T23:56:01.123085Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.124154Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.127752Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:56:01.188533Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.189593Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.193365Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:56:01.454439Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.454532Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.455429Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.455849Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.460002Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T23:56:01.461748Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T23:56:01.520764Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.521783Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.525669Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T23:56:01.554240Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.555254Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.559131Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:56:01.571624Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.572658Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.576473Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:56:01.637304Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.639120Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.643300Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T23:56:01.904543Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.906039Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.909704Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:56:01.970624Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.972115Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.975584Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:56:02.036639Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.038108Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.041501Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T23:56:02.102509Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.103958Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.107575Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:56:02.168590Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.170020Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.173666Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T23:56:02.234574Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.234712Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.236051Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.236669Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.240588Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:56:02.241584Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T23:56:02.301676Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.301830Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.303110Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.303678Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.307838Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:56:02.309645Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T23:56:02.368714Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.370065Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.373693Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T23:56:02.434411Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.599373Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.600618Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.604355Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T23:56:02.665212Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.930399Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.931580Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.935105Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T23:56:02.996107Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.012632Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.013733Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.017215Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:56:03.078390Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.343578Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.344730Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.348173Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T23:56:03.409235Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.674552Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.675788Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.678956Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T23:56:03.740021Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.005104Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.005190Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.005875Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.006296Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.010265Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:56:04.010833Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T23:56:04.070897Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.070986Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.071419Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.071619Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.072004Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.072464Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.079502Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:56:04.081341Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:56:04.082460Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:56:04.137358Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.137448Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.137493Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.137836Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.138219Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.141966Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:56:04.178720Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:56:04.202702Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.202809Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.203109Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.206412Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:56:04.267352Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:09.732253Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:23.824008Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:23.824008Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] 
[2026-05-27T23:56:23.824008Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:23.824074Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] 
[2026-05-27T23:56:23.824086Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:23.824099Z] [nf-9c42a29cee3706bb2a37b9a3a429e416-e8240-tkghg] [788_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec