Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/73bca1ba80c4b143f06a4c975cd378/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f9dff405351ae9980859be791ec4fd/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4d2a1d9057fe3eb34cd64cc360988f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4d2a1d9057fe3eb34cd64cc360988f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-2yb1lzms because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-28 00:00:42,509 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-28 00:00:43,344 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-28 00:00:43,525 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-28 00:00:44,505 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-28 00:00:44,672 - cnv_pipe.batch.run_model - INFO - Processing cluster 725 with 188 probes
2026-05-28 00:00:45,067 - cnv_pipe.batch.run_model.cluster725 - INFO - Child process started for cluster 725 with 188 probes
2026-05-28 00:01:42,698 - cnv_pipe.batch.run_model.cluster725 - INFO - Child process finished cluster 725. Wrote cluster_725_samples.csv and cluster_725_params.csv
2026-05-28 00:01:42,699 - cnv_pipe.batch.run_model - INFO - Cluster 725 finished in 58.03 seconds. Status: SUCCESS