File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/eb9cdf5af5b3fb6133b36320b320c5/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T23:55:53.115973Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:53.117242Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:53.117277Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:53.117284Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:53.117291Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXwjf7Ti'
[2026-05-27T23:55:53.117297Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:53.117306Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:53.117312Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:53.117317Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:53.117322Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:53.117328Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:53.117332Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:53.117337Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:53.117342Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:53.118471Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:53.118592Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:53.128213Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:53.128923Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:53.129209Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:53.129491Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:53.129804Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.130706Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.130848Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.131121Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.131632Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.131772Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.132027Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.132717Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.132909Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.133170Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.133344Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.135608Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.135849Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:53.135973Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.136284Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.136664Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.136822Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.136896Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137021Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137096Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137310Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137388Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137515Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137588Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.138205Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.138332Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.138813Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.138905Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.139049Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.139136Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.139270Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.139467Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.140403Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.140559Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.140727Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.140824Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.140969Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.141065Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.141234Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.141461Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.142242Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.142905Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.143084Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.143174Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.143311Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.143398Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.143538Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.143702Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.143891Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.144123Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.144271Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.144358Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.144509Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.144755Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.145557Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.145644Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.145784Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.145875Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.146010Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.146096Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.146233Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.146318Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.146459Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.146773Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162113Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162281Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162376Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162575Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162673Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162785Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.162875Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.163009Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.163102Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:53.163176Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:53.170245Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.173700Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.174212Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.174778Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.176015Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.178924Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.179597Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T23:55:53.180092Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.180988Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.184289Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T23:55:53.184689Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.187048Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T23:55:53.192695Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T23:55:53.195663Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T23:55:53.198763Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T23:55:53.199075Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T23:55:53.200075Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T23:55:53.302492Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.302638Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.303786Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.304696Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.309490Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T23:55:53.310800Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T23:55:53.420565Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.421833Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.424990Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T23:55:53.536386Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.537748Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.541420Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T23:55:53.903238Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.904218Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.908101Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T23:55:53.912793Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.914076Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.916826Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T23:55:53.929943Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.931000Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.934159Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T23:55:53.963114Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.963206Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.964267Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.964621Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.968368Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T23:55:53.969083Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T23:55:53.981524Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.982592Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.986016Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T23:55:54.015013Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.016099Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.019597Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T23:55:54.130658Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.131802Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.135644Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T23:55:54.396806Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.397896Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.401428Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T23:55:54.512814Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.514074Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.517836Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T23:55:54.522428Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.523284Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.526478Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T23:55:54.587883Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.588888Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.591619Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T23:55:54.703117Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.703212Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.704218Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.704607Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.708520Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T23:55:54.709907Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T23:55:54.769785Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.769889Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.770890Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.771566Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.775681Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T23:55:54.776843Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T23:55:54.937836Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.939117Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.942564Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T23:55:55.003616Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.004798Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.008552Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T23:55:55.671440Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.672558Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.676743Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:55.787653Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.788598Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.791557Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T23:55:55.952951Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.953829Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.957428Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T23:55:56.018380Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.019546Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.023084Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T23:55:56.084039Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.085363Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.089428Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T23:55:56.150940Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.152051Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.155972Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T23:55:56.266937Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.268041Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.271461Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T23:55:56.332420Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.333343Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.336248Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T23:55:56.399049Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.400165Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.403640Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T23:55:56.465179Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.465319Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.465367Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.466491Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.466997Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.469718Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.471577Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T23:55:56.473299Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:56.474370Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T23:55:56.537671Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.537743Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.537770Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.538379Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.538629Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.539062Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.541948Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:56.543144Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T23:55:56.545489Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T23:55:56.606965Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.607153Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.607198Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.608057Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.608449Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.608932Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.614098Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T23:55:56.614661Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T23:55:56.615924Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T23:55:56.617364Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.618116Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.621033Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T23:55:56.651499Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.652035Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.655342Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T23:55:56.655902Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.656436Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.659360Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T23:55:56.688345Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.688949Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.691610Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T23:55:56.752893Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.753439Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.756361Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T23:55:56.785347Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.785856Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.788372Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T23:55:56.849831Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.849944Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.850483Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.850943Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.853632Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T23:55:56.854664Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T23:55:56.914955Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.029654Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.030357Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.033743Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T23:55:57.095042Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.209821Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.210505Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.214066Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T23:55:57.324978Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.494399Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.495099Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.498102Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T23:55:57.559677Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.591934Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.592598Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.595905Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T23:55:57.624726Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.040401Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.041149Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.044556Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T23:55:58.105528Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.270050Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.270744Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.274010Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T23:55:58.335044Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.367157Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.367797Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.371125Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T23:55:58.400073Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.400480Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.400691Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.401027Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.401548Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.405432Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.407339Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.408355Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:58.434379Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.434649Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.437578Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.442524Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.442605Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.442836Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.445414Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.474761Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.474857Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.475134Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.477735Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:58.507071Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.771456Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:03.654003Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:03.654003Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] 
[2026-05-27T23:56:03.654003Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:03.654085Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] 
[2026-05-27T23:56:03.654095Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:03.654105Z] [nf-c2eb9cdf5af5b3fb6133b36320b320c5-797a9-77lpf] [696_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec