Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/e86616ca51b5e034d703faefe88fa6/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/e86616ca51b5e034d703faefe88fa6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/3ff9499941a6df5e9cecb065774346/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/3ff9499941a6df5e9cecb065774346/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T23:55:51.210037Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:51.210526Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:51.210540Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:51.210545Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:51.210549Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXMsDwl8'
[2026-05-27T23:55:51.210554Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:51.210559Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:51.210563Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:51.210567Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:51.210571Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:51.210575Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:51.210579Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:51.210583Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:51.210587Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:51.211180Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:51.211310Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:51.221049Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:51.222005Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:51.222294Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:51.222591Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:51.222739Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.223127Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.223222Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.223299Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.223424Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.223494Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.223625Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.223842Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.224286Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.224450Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.224610Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.225042Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.225458Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.225777Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.225956Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.226227Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.226780Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.228995Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.229178Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.229573Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.229721Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.229929Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.230051Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.230250Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.230376Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.230657Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:51.231374Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.231614Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.232336Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.232484Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.232697Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.232814Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.233026Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.233129Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.233311Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.233425Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.234302Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.234447Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.234641Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.234745Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.234927Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.235030Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.235214Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.235313Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.236066Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.236567Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.236944Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.237861Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.238207Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.238334Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.238526Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.238633Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.239104Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.240108Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.240815Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.240947Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.241152Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.241304Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.241489Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.241592Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.241805Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.242274Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.243037Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.243160Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.243338Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.243446Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.243671Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.243771Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.245024Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.245937Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.246144Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.246257Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.246514Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.246641Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.248953Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.249986Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.251068Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.251209Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.251402Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.251505Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.251684Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.251787Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.252521Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.253466Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.254931Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.255704Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.256596Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.256749Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.257184Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.257606Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.257729Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.258404Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.258628Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.258973Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.259661Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.259869Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.260239Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.260629Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.261712Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.262083Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.262436Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.263186Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.263731Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.264595Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.265207Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.266685Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.270552Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:51.277761Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:55:51.278848Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-05-27T23:55:51.282522Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-05-27T23:55:51.285317Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:51.286040Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-05-27T23:55:51.287863Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.289025Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:51.312330Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.312579Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.312754Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.313845Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.315177Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.315385Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.315515Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.316216Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.317679Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:51.317824Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:51.384083Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.384195Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.385607Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.386003Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.391559Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:51.393468Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-05-27T23:55:52.454336Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.455822Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.459578Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:55:52.521206Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.522743Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.526231Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-05-27T23:55:52.539218Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.540678Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.544095Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-05-27T23:55:53.005713Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.007497Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.011131Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-05-27T23:55:53.974567Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.976009Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.980437Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:55:54.041125Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.047660Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.051281Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:55:54.112966Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.114594Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.118675Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-05-27T23:55:54.179445Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.180845Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.184272Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-05-27T23:55:54.495983Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.497577Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.501169Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:54.562245Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.562379Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.563763Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.564109Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.568082Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-05-27T23:55:54.569439Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:54.629923Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.631353Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.634486Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-05-27T23:55:54.635784Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:55:54.636118Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.637813Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.638165Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.640329Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.642982Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-05-27T23:55:54.645444Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-05-27T23:55:54.658341Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.659627Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.662630Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:54.692025Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.692123Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.693543Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.693951Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.698101Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:54.698990Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:54.702360Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.703635Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.706659Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:54.767692Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.767821Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.769446Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.769761Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.774035Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:54.775328Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-05-27T23:55:54.780529Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.781820Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.785130Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:54.896953Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.897086Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.898392Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.898769Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.902516Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:54.904032Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-05-27T23:55:54.963303Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.963405Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.964620Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.964977Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.968994Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:55:54.970185Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:55:55.029946Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.031399Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.035346Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-05-27T23:55:55.607696Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.609173Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.612678Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-05-27T23:55:55.673587Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.673677Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.675031Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.675402Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.679569Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-05-27T23:55:55.680771Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:55.742662Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.744013Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.748103Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-05-27T23:55:56.110560Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.112039Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.115875Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:55:56.227630Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.228746Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.232580Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:56.293345Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.294545Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.298245Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-05-27T23:55:56.326979Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.328189Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.331973Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-05-27T23:55:56.332413Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.333593Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.336844Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-05-27T23:55:56.397843Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.399051Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.402278Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:55:56.463546Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.464814Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.468106Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:55:56.529228Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.530075Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.536526Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-05-27T23:55:56.562331Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.563475Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.566629Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-05-27T23:55:57.431800Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.433066Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.436805Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-05-27T23:55:57.497526Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.498733Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.502079Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:57.563022Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.564458Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.568111Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-05-27T23:55:57.629063Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.630409Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.633722Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:57.694638Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.695940Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.699530Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:57.810595Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.810721Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.811836Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.814430Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.816749Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-05-27T23:55:57.817959Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:57.879023Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.880161Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.883637Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:57.944430Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.944553Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.945669Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.946038Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.950147Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:55:57.994448Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:55:58.010122Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.010925Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.014112Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-05-27T23:55:58.043034Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.044086Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.047694Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:55:58.158551Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.160306Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.163355Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-05-27T23:55:58.164356Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.165359Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.168198Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-05-27T23:55:58.197185Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.198209Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.201085Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-05-27T23:55:58.206209Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.207163Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.210280Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T23:55:58.522400Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.523691Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.527178Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-05-27T23:55:58.588200Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.589264Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.592899Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:55:58.653934Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.654972Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.658383Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-05-27T23:55:58.719248Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.720368Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.723720Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:55:58.784856Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.785874Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.789533Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-05-27T23:55:59.000565Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.001612Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.005456Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-05-27T23:55:59.066035Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.067073Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.070745Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:59.131340Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.132271Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.135966Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-05-27T23:55:59.797961Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.798068Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.798969Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.799395Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.802896Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T23:55:59.804084Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-05-27T23:55:59.863617Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.863709Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.864526Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.864907Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.867743Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-05-27T23:55:59.869006Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T23:55:59.928929Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.929022Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.929857Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.930199Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.933965Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:55:59.934772Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-05-27T23:55:59.994606Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.995513Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.998473Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:56:00.059736Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.060635Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.063243Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:56:00.092467Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.093285Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.096718Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-05-27T23:56:00.157325Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.158234Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.161238Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-05-27T23:56:00.222364Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.223226Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.226831Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-05-27T23:56:00.255392Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.256396Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.259679Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-05-27T23:56:00.320519Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.321411Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.325147Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:56:00.436109Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.437257Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.440890Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:56:00.469501Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.470325Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.473806Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:56:00.478370Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.479069Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.482244Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-05-27T23:56:00.511164Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.511998Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.515362Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-05-27T23:56:00.576724Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.142850Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.143908Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.147621Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:56:01.208307Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.272588Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.273303Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.276445Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-05-27T23:56:01.305588Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.369931Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.370663Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.373486Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:56:01.402646Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.667220Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.667945Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:56:01.670972Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-05-27T23:56:01.731972Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.747691Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.748409Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:56:02.751996Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-05-27T23:56:02.812830Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.027355Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.028092Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:56:03.031254Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-05-27T23:56:03.060461Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.826905Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.827738Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.830862Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-05-27T23:56:08.892306Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.892794Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.893037Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.893582Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.894656Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.900935Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:56:08.903393Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:56:08.904791Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:56:08.960265Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.960365Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.960400Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.960766Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.961119Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:56:08.963913Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:56:08.964899Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:56:08.993219Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:09.000939Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:09.001282Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:56:09.004192Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:56:09.033625Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:10.250045Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:24.329797Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:24.329797Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] 
[2026-05-27T23:56:24.329797Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:24.329902Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] 
[2026-05-27T23:56:24.329912Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:24.329921Z] [nf-35e86616ca51b5e034d703faefe88fa6-80dae-vjms8] [648_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec