cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr3:7000001, elapsed 0.1s, est remaining 2.2s, peak mem 801MB, user 0.2s, sys 3.0s, output queue size 107
progress 10% @chr3:142000001, elapsed 0.2s, est remaining 2.1s, peak mem 801MB, user 0.2s, sys 13.5s, output queue size 268
progress 15% @chr4:34000001, elapsed 0.3s, est remaining 1.9s, peak mem 801MB, user 0.4s, sys 28.5s, output queue size 430
progress 20% @chr2:175000001, elapsed 0.4s, est remaining 1.6s, peak mem 801MB, user 0.5s, sys 40.8s, output queue size 592
progress 25% @chr1:105000001, elapsed 0.5s, est remaining 1.5s, peak mem 801MB, user 0.7s, sys 49.4s, output queue size 753
progress 30% @chr7:91000001, elapsed 0.6s, est remaining 1.4s, peak mem 801MB, user 0.8s, sys 58.1s, output queue size 914
progress 35% @chr8:90000001, elapsed 0.7s, est remaining 1.3s, peak mem 801MB, user 1.0s, sys 68.0s, output queue size 1076
progress 40% @chr9:107000001, elapsed 0.8s, est remaining 1.2s, peak mem 801MB, user 1.2s, sys 77.4s, output queue size 1237
progress 45% @chr10:105000001, elapsed 0.9s, est remaining 1.1s, peak mem 801MB, user 1.5s, sys 86.9s, output queue size 1399
progress 50% @chr11:4000001, elapsed 1.0s, est remaining 1.0s, peak mem 801MB, user 1.7s, sys 96.7s, output queue size 1561
progress 55% @chr12:104000001, elapsed 1.1s, est remaining 0.9s, peak mem 801MB, user 1.9s, sys 107.2s, output queue size 1723
progress 60% @chr14:33000001, elapsed 1.2s, est remaining 0.8s, peak mem 801MB, user 2.1s, sys 119.3s, output queue size 1885
progress 65% @chr13:82000001, elapsed 1.2s, est remaining 0.7s, peak mem 801MB, user 2.2s, sys 130.0s, output queue size 2046
progress 70% @chr17:47000001, elapsed 1.3s, est remaining 0.6s, peak mem 801MB, user 2.5s, sys 140.0s, output queue size 2208
progress 75% @chr14:54000001, elapsed 1.4s, est remaining 0.5s, peak mem 801MB, user 2.6s, sys 150.0s, output queue size 2370
progress 80% @chr22:23000001, elapsed 1.4s, est remaining 0.4s, peak mem 801MB, user 2.8s, sys 160.0s, output queue size 2532
progress 85% @chrX:100000001, elapsed 1.5s, est remaining 0.3s, peak mem 801MB, user 3.2s, sys 170.5s, output queue size 2710
progress 90% @chrX:115000001, elapsed 1.5s, est remaining 0.2s, peak mem 801MB, user 3.3s, sys 183.2s, output queue size 3120
progress 95% @chr5:30000001, elapsed 1.6s, est remaining 0.1s, peak mem 801MB, user 3.5s, sys 190.9s, output queue size 3839
progress 100% @HLA-DQA1*01:10:1, elapsed 1.9s, est remaining 0.0s, peak mem 801MB, user 3.7s, sys 205.5s, output queue size 399
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 53230
output file size: 44180
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.006 user 0.000 sys 0.019 real
"predict_filter": 187 calls 0.000 user 0.008 sys 0.137 real
advance: 3219322 calls 0.527 user 88.421 sys 105.249 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.001 user 0.011 sys 2.178 real
fetch_ref: 476 calls 0.010 user 0.060 sys 1.510 real
idle: 20633 calls 1.491 user 0.859 sys 1005.825 real
init: 1 calls 0.472 user 0.434 sys 1.589 real
overall: 840024064 mem 6.048 user 211.647 sys 4.840 real