[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXudIri1/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXudIri1/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXudIri1/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T23:55:48.761626Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.762427Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.762453Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.762459Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.762465Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXudIri1'
[2026-05-27T23:55:48.762472Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.762480Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.762485Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.762491Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:48.762497Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.762502Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.762508Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.762513Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.762519Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.763069Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.763183Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.771234Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.771959Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.772238Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.772453Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.772767Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773142Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773235Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773317Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773437Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773505Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773622Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773685Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773802Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.773886Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.774186Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.774489Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.774550Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.775137Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.775727Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776114Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.776257Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.778409Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.778731Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.779043Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779293Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779362Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779480Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779551Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779664Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779728Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779848Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.779919Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.780133Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.780490Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.780665Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.780743Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.780866Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.780934Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.781049Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.781113Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.781228Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.781298Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.781430Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.781554Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782086Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782189Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782684Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.782755Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783386Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783451Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783570Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783738Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.783987Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784448Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784583Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784790Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784911Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.784978Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785095Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785159Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785273Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785338Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785458Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.785987Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786459Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786527Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786645Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786713Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786822Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.786897Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803201Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803548Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803624Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803836Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803909Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803999Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.804066Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.804179Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.806518Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.807223Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.824577Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825302Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825623Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826281Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827163Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.827600Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.828450Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.829227Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.829975Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.835829Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T23:55:48.837322Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:48.843275Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:48.843984Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T23:55:48.846457Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T23:55:48.849737Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T23:55:48.852565Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:48.853583Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T23:55:48.950843Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951946Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.955963Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T23:55:50.019718Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.020770Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.024219Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T23:55:50.186034Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.187902Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.192169Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:50.303779Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.305009Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.309786Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T23:55:50.772128Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.773421Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.777197Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:51.038600Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.039986Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.044755Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T23:55:51.104432Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.105349Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.109061Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T23:55:51.170276Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.171314Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.174885Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:51.286250Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.287389Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.291330Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T23:55:51.502879Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.503986Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.508353Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:51.671627Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.673088Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.676854Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T23:55:51.737852Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.738972Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.742456Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T23:55:52.656593Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.657565Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.660861Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T23:55:52.721941Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.722972Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.726247Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:52.787714Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.788709Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.792602Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T23:55:52.821846Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.822813Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.826513Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T23:55:52.887819Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.887977Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.888784Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.889127Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.893423Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:52.895170Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:53.254812Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.255892Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.258978Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T23:55:53.320490Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.320648Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.321797Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.322254Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.325478Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:53.326526Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:53.387047Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.387200Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.387281Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.388417Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.388986Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.389510Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.393407Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T23:55:53.395372Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T23:55:53.395686Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.396253Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T23:55:53.396831Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.400266Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:53.429310Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.429426Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.430297Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.430701Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.434321Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:53.435479Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:53.447023Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.447141Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.447175Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.448078Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.448471Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.449283Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.453458Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:53.455318Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T23:55:53.456834Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T23:55:53.466164Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.467118Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.470134Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T23:55:53.499305Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.499429Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.500192Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.500555Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.503776Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T23:55:53.504856Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:53.508517Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.509266Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.512041Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:53.541442Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.542488Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.546150Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T23:55:53.558851Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.559655Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.563291Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T23:55:53.567724Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.568495Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.571462Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:53.632738Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.633559Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.636775Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T23:55:53.998901Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.999675Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.003412Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:54.115598Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.116901Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.120403Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T23:55:54.181847Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.182946Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.186469Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:55:54.298076Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.299284Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.303458Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:54.464821Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.465937Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.469142Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T23:55:54.530643Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.532390Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.536370Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T23:55:54.697685Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.698895Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.702626Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:55:54.764073Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.765294Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.769182Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T23:55:54.830479Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.831612Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.835471Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T23:55:55.347745Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.348385Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.352152Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T23:55:55.864424Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.865100Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.868366Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T23:55:55.929872Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.930669Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.935125Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T23:55:55.995559Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.461239Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.462089Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.465915Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T23:55:56.526967Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.591289Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.591386Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.591896Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.592258Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.595575Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T23:55:56.596916Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T23:55:56.657376Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.657455Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.022620Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.023359Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.027366Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:57.088257Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.553904Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.554510Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.558172Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T23:55:57.619286Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.135030Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.135598Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.139178Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T23:55:58.200409Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.315104Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.315686Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.319280Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:58.348779Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.349100Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.349272Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.349496Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.349912Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.354130Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.355664Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.356456Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:58.383760Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.384075Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.387285Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.392212Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.392278Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.392519Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.395278Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.424730Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.424828Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.425093Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.427930Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:58.457577Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.374384Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:07.651167Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:07.651167Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] 
[2026-05-27T23:56:07.651167Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:07.651247Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] 
[2026-05-27T23:56:07.651255Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:07.651261Z] [nf-7a44c4af18ad3505b5d02cd19fade4fd-8f967-vfl2h] [729_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec