Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/8817a9638cde135fcdfdb8dcc5f8b0/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/b06b0f1c43d7466812ee28367d6a01/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/8817a9638cde135fcdfdb8dcc5f8b0/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/b06b0f1c43d7466812ee28367d6a01/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T23:55:45.763547Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:45.768431Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:45.768460Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:45.768467Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:45.768471Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9LiQcL'
[2026-05-27T23:55:45.768475Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:45.768480Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:45.768484Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:45.768488Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-27T23:55:45.768491Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:45.768495Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:45.768499Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:45.768502Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:45.768506Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:45.769598Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:45.769657Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:45.775430Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:45.776339Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:45.776704Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:45.777243Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:45.777568Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.778056Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.778146Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.778221Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.778340Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.778408Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.778527Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.778588Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.779092Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.779199Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.779649Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.779826Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.780093Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.780954Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.783693Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.784519Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.784780Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:45.785216Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.785371Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.785438Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.785679Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.785784Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.785906Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.786042Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.786273Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.786462Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787020Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787090Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787206Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787279Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787389Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787455Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787586Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787646Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787761Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787826Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.787947Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.788056Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.788303Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.788602Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.789225Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.789400Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.790025Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.790574Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791120Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791227Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791361Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791432Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791648Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791720Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791840Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.791934Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.792378Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.792875Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793001Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793067Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793186Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793254Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793359Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793426Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793539Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793600Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793711Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.793775Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.794167Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.794679Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.794802Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.794866Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.794982Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.795048Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.795171Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.795249Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.795384Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.795466Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.797080Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.797961Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798103Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798174Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798286Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798351Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798465Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798580Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798701Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798765Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.798880Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.799346Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800026Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800108Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800221Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800291Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800411Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800479Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800586Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800652Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800769Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.800834Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.813872Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.813994Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814067Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814325Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814399Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814584Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814657Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814792Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814866Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:45.814918Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:45.834805Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.835761Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.836143Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.836939Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.837833Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.838831Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.840738Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.844031Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T23:55:45.844560Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.845875Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.853088Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T23:55:45.860217Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T23:55:45.864995Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T23:55:45.870669Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T23:55:45.871463Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:55:45.873239Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:45.874171Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:55:45.967017Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.968236Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:45.973305Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T23:55:46.133676Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.135002Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.139159Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T23:55:46.350420Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.351730Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.355250Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T23:55:46.384623Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.386155Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.390312Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T23:55:46.952120Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.953818Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:46.957429Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:55:47.168917Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.170961Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.174434Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:47.285847Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.287183Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.290976Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:55:47.552466Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.553739Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.557604Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T23:55:47.819375Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.820726Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.824581Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T23:55:47.885518Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.886752Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.889699Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T23:55:47.950840Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.951894Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.954981Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T23:55:48.317150Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.318463Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.322570Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T23:55:48.383519Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.384753Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.388502Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T23:55:48.449579Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.450608Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.454595Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T23:55:48.483260Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.484285Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.488197Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:55:48.650013Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.651190Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.654838Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T23:55:48.716094Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.717041Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.720608Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T23:55:49.082731Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.083904Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.087670Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T23:55:49.149445Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.149567Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.150731Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.151154Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.155161Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T23:55:49.155722Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T23:55:49.218998Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.219118Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.220197Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.220541Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.224840Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T23:55:49.225788Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T23:55:49.285609Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.287248Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.290963Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T23:55:49.351797Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.353095Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.357091Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:49.467899Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.469370Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.473423Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T23:55:49.534100Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.535521Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.539306Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T23:55:49.568209Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.569445Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.572714Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T23:55:49.585582Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.586839Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.590709Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:55:49.619944Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.621197Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.625560Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T23:55:49.654122Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.655344Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.658714Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T23:55:49.719948Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.721060Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.724609Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:55:50.137068Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.138199Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.141842Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T23:55:50.202911Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.203985Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.208181Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T23:55:50.269424Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.270742Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.275795Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T23:55:50.486896Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.488004Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.492707Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T23:55:50.803981Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.805236Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.809651Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T23:55:50.869987Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.871398Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.875138Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T23:55:50.936476Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.937920Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.942098Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T23:55:51.002859Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.004081Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.007650Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T23:55:51.068875Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.070177Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.073751Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T23:55:51.102840Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.104130Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.107923Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T23:55:51.112836Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.114031Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.118237Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T23:55:51.147280Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.148274Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.151922Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T23:55:51.180638Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.181702Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.185088Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T23:55:51.190072Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.190944Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.194368Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:55:51.223482Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.224493Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.228369Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:55:51.490105Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.491106Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.494818Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T23:55:51.556425Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.557487Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.561131Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T23:55:51.591741Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.592885Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.596936Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T23:55:51.758222Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.759237Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.763004Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T23:55:51.974920Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.976051Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.979885Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T23:55:52.141443Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.142399Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.146452Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T23:55:52.458355Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.459294Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.462843Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T23:55:52.524295Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.525279Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.528885Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T23:55:52.590295Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.590437Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.591323Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.591767Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.595465Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T23:55:52.608522Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.609376Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.613569Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T23:55:52.626336Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.627184Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.630812Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T23:55:52.640288Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T23:55:52.643557Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.643643Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.643689Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.644630Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.644991Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.645462Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.648913Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T23:55:52.653307Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T23:55:52.654774Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:52.680167Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.681256Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.684776Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T23:55:52.689619Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.689709Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.690552Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.691034Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.694774Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T23:55:52.696014Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T23:55:52.755879Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.756120Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.756176Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.757107Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.757741Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.758285Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.765019Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T23:55:52.765814Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T23:55:52.766897Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:55:52.825415Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.826433Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.830225Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T23:55:52.891241Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.892268Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.896805Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:53.408583Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.409410Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.413741Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T23:55:53.475071Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.475913Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.479657Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T23:55:53.541130Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.541926Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.545656Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:53.607063Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.607842Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.611750Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T23:55:53.624568Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.625273Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.630253Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T23:55:53.658077Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.658190Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.658902Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.659728Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.663869Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T23:55:53.664671Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T23:55:53.669891Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.670457Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.675215Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T23:55:53.702833Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.702932Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.703573Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.704210Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.708775Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:53.710026Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T23:55:53.770152Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.770916Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.774856Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T23:55:53.836176Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.950990Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.951720Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.955472Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T23:55:54.016776Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.181876Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.182634Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.186784Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T23:55:54.247618Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.412210Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.412877Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.416767Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T23:55:54.478273Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.743606Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.744285Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.747645Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T23:55:54.809364Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.974212Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.974829Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.978546Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T23:55:55.040167Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.155270Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.155909Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.160407Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T23:55:55.221213Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.238231Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.238892Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.242999Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T23:55:56.303981Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.304378Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.304581Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.305247Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.305774Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.312052Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:56.312589Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:56.313376Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:56.340850Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.341256Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.343700Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.344055Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.344660Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:56.346720Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.347167Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:56.378589Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.378684Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.378894Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.381731Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:56.412198Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:04.735467Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:18.888636Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:18.888636Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] 
[2026-05-27T23:56:18.888636Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:18.888736Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] 
[2026-05-27T23:56:18.888744Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:18.888752Z] [nf-dab06b0f1c43d7466812ee28367d6a01-39753-6zn9c] [667_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec