File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/21f581bbdbc2a0997d1da75766caa6/.command.err
Size
61.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[2026-05-27T23:55:48.785652Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.786512Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.786524Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.786530Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.786535Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXenm8Nx'
[2026-05-27T23:55:48.786540Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.786546Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.786550Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.786554Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-05-27T23:55:48.786559Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.786563Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.786568Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.786572Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.786576Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.787195Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.787303Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.793402Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.793963Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.794108Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.794284Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.794433Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.795073Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.795583Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.796902Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.797252Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.797315Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.797552Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.797652Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.797803Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.797885Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.798029Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.798109Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.798249Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.798329Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.798471Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.798552Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.798828Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.799149Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.799338Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.799429Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.799569Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.799719Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.799854Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.799938Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.800070Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.800151Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.800299Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.800723Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801011Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801094Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801230Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801340Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801477Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801557Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801689Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801774Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.801914Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.802052Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.802723Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.802804Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803014Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803093Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803232Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.803316Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.804793Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.804875Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805008Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805087Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805284Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805363Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805500Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805579Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805706Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.805781Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.806444Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.806817Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.807793Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.807885Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808011Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808092Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808225Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808298Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808427Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808507Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808637Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.808715Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824167Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824392Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824591Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824834Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.824946Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825079Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825183Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825353Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.825460Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.826981Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.830970Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.831874Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832272Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.832675Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.833084Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.833437Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.833897Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.834382Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.835111Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.837793Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T23:55:48.841729Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:55:48.845770Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:48.850518Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T23:55:48.851636Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:48.918264Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:48.949956Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950034Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950079Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951101Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951495Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951703Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.955818Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:48.958500Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:50.299876Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T23:55:50.318368Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.319182Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.322662Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T23:55:50.533963Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.535100Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.538010Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:50.749458Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.749562Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.750618Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.750907Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.754227Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:50.755006Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T23:55:50.815532Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.816660Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.819228Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:50.848551Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.849710Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.852956Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:51.593668Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T23:55:51.615032Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.615151Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.615942Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.616189Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.619617Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:51.621029Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:51.680879Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.681955Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.685088Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T23:55:51.746244Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.747403Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.750800Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T23:55:51.811887Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.812864Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.815953Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T23:55:51.876995Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.878030Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.880743Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:51.881799Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.882662Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.885108Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T23:55:51.914495Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.914592Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.915593Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.915947Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.919376Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T23:55:51.920463Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T23:55:52.231016Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.231109Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.231836Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.232590Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.235598Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:52.236459Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T23:55:52.266294Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.266386Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.267273Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.267782Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.271126Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:52.271962Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T23:55:52.332484Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.333238Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.335870Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:52.398475Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.399334Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.402591Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T23:55:52.714547Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.714651Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.715404Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.715863Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.718642Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:52.719870Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:52.780073Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.780154Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.780869Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.781283Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.784737Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:52.785225Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T23:55:52.845769Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.846464Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.849501Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T23:55:52.911052Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.911807Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.915128Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T23:55:53.378863Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T23:55:53.427350Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.427471Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.428248Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.428614Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.431519Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:53.432774Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T23:55:53.435271Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.435919Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.438577Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:53.468226Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.468326Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.468977Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.469311Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.472510Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T23:55:53.473634Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T23:55:53.479266Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.479907Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.482160Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T23:55:53.511911Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.512550Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.515576Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T23:55:53.977860Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.978675Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.981691Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T23:55:54.042684Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.042812Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.043586Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.043998Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.047634Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:54.048274Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T23:55:54.308942Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.309072Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.309926Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.310266Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.313106Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T23:55:54.313980Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T23:55:54.342544Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.342640Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.343406Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.343740Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.346688Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T23:55:54.347848Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T23:55:54.375936Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.376571Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.379428Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T23:55:54.541089Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.541856Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.545023Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:54.605925Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.606752Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.609498Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T23:55:54.670748Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.671506Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.674667Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T23:55:54.703613Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.704297Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.707051Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:55:54.736356Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.737090Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.740132Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T23:55:54.801117Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.915296Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.915946Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.918731Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T23:55:54.947937Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.112342Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.112913Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.115767Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T23:55:55.145105Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.459801Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.460363Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.463216Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T23:55:55.492860Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.657211Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.657850Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.660427Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T23:55:55.689735Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.954530Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.955040Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.957610Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T23:55:56.019213Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.035285Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.035714Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.038362Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T23:55:56.099873Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.666329Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.666917Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.669801Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:57.730829Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.731166Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.731339Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.731686Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.732188Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.735776Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:57.737319Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:57.737888Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:57.764474Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.764539Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.764569Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.764823Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.765063Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.767470Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:57.768165Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:57.796942Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.797006Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.797221Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.799400Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:57.829031Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.395110Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:07.675053Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:07.675053Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] 
[2026-05-27T23:56:07.675053Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:07.675154Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] 
[2026-05-27T23:56:07.675163Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:07.675171Z] [nf-ec21f581bbdbc2a0997d1da75766caa6-c3535-zsggw] [716_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec