Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/947ff2edd3744512680bdb984b92c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/0efad631a02aa9a35d9acec70d8b7f/positive_somatic_control_1.snv_indel.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/947ff2edd3744512680bdb984b92c4/.command.run
==> STAGING COMPLETE (3 inputs)

Checking the headers and starting positions of 1 files
ls: positive_somatic_control_1.snv_indel.phased.vcf.gz.csi: No such file or directory