cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:82000001, elapsed 0.1s, est remaining 2.3s, peak mem 807MB, user 0.5s, sys 3.1s, output queue size 153
progress 10% @chr3:118000001, elapsed 0.2s, est remaining 2.1s, peak mem 807MB, user 0.6s, sys 14.0s, output queue size 314
progress 15% @chr2:114000001, elapsed 0.3s, est remaining 1.7s, peak mem 807MB, user 0.7s, sys 24.5s, output queue size 369
progress 20% @chr1:154000001, elapsed 0.4s, est remaining 1.5s, peak mem 807MB, user 1.0s, sys 35.3s, output queue size 530
progress 25% @chr6:19000001, elapsed 0.4s, est remaining 1.3s, peak mem 807MB, user 1.2s, sys 46.3s, output queue size 692
progress 30% @chr4:97000001, elapsed 0.5s, est remaining 1.2s, peak mem 807MB, user 1.6s, sys 59.1s, output queue size 853
progress 35% @chr7:141000001, elapsed 0.6s, est remaining 1.0s, peak mem 807MB, user 2.0s, sys 71.6s, output queue size 1014
progress 40% @chr9:14000001, elapsed 0.6s, est remaining 0.9s, peak mem 807MB, user 2.2s, sys 84.7s, output queue size 1177
progress 45% @chr10:61000001, elapsed 0.7s, est remaining 0.8s, peak mem 807MB, user 2.5s, sys 97.1s, output queue size 1338
progress 50% @chr10:63000001, elapsed 0.8s, est remaining 0.8s, peak mem 807MB, user 2.9s, sys 110.1s, output queue size 1500
progress 55% @chr12:68000001, elapsed 0.8s, est remaining 0.7s, peak mem 807MB, user 3.3s, sys 123.4s, output queue size 1662
progress 60% @chr13:61000001, elapsed 0.9s, est remaining 0.6s, peak mem 807MB, user 3.7s, sys 136.6s, output queue size 1824
progress 65% @chr14:22000001, elapsed 0.9s, est remaining 0.5s, peak mem 807MB, user 4.1s, sys 150.3s, output queue size 1985
progress 70% @chr12:99000001, elapsed 1.0s, est remaining 0.4s, peak mem 807MB, user 4.4s, sys 163.2s, output queue size 2147
progress 75% @chr16:37000001, elapsed 1.0s, est remaining 0.3s, peak mem 807MB, user 4.8s, sys 176.9s, output queue size 2308
progress 80% @chr22:5000001, elapsed 1.1s, est remaining 0.3s, peak mem 807MB, user 5.4s, sys 189.2s, output queue size 2471
progress 85% @chrX:123000001, elapsed 1.2s, est remaining 0.2s, peak mem 810MB, user 5.7s, sys 202.2s, output queue size 2635
progress 90% @chr1:162000001, elapsed 1.2s, est remaining 0.1s, peak mem 810MB, user 6.1s, sys 217.3s, output queue size 2892
progress 95% @chrY:45000001, elapsed 1.3s, est remaining 0.1s, peak mem 810MB, user 6.4s, sys 231.8s, output queue size 3507
progress 100% @HLA-DRB1*11:04:01:1, elapsed 1.4s, est remaining 0.0s, peak mem 810MB, user 6.8s, sys 247.8s, output queue size 679
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 50711
output file size: 43805
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.004 user 0.000 sys 0.013 real
"predict_filter": 171 calls 0.002 user 0.010 sys 0.045 real
advance: 3219322 calls 0.810 user 112.851 sys 128.155 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.012 user 0.002 sys 1.661 real
fetch_ref: 448 calls 0.001 user 0.034 sys 0.167 real
idle: 20632 calls 0.658 user 0.757 sys 765.506 real
init: 1 calls 0.375 user 0.169 sys 0.750 real
overall: 849481728 mem 8.464 user 254.094 sys 4.007 real