cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119922193, elapsed 0.0s, est remaining 0.9s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 3846
progress 10% @chr2:17816519, elapsed 0.1s, est remaining 0.8s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 7782
progress 15% @chr2:189051320, elapsed 0.1s, est remaining 0.8s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 2174
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 12635
progress 25% @chr4:88056086, elapsed 0.2s, est remaining 0.7s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 22905
progress 30% @chr5:147394035, elapsed 0.3s, est remaining 0.6s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 32941
progress 35% @chr6:127137390, elapsed 0.3s, est remaining 0.6s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 42896
progress 40% @chr7:128811800, elapsed 0.4s, est remaining 0.6s, peak mem 159MB, user 0.0s, sys 0.0s, output queue size 52373
progress 45% @chr9:710804, elapsed 0.5s, est remaining 0.6s, peak mem 279MB, user 0.0s, sys 0.1s, output queue size 7548
progress 50% @chr10:31520126, elapsed 0.5s, est remaining 0.5s, peak mem 288MB, user 0.0s, sys 0.1s, output queue size 17506
progress 55% @chr11:48365485, elapsed 0.6s, est remaining 0.5s, peak mem 297MB, user 0.0s, sys 0.1s, output queue size 27953
progress 60% @chr12:21925942, elapsed 0.6s, est remaining 0.4s, peak mem 297MB, user 0.0s, sys 0.1s, output queue size 37502
progress 65% @chr13:49220338, elapsed 0.7s, est remaining 0.4s, peak mem 297MB, user 0.0s, sys 0.1s, output queue size 48554
progress 70% @chr15:42725489, elapsed 0.8s, est remaining 0.3s, peak mem 297MB, user 0.0s, sys 0.1s, output queue size 58590
progress 75% @chr16:30946730, elapsed 0.8s, est remaining 0.3s, peak mem 297MB, user 0.0s, sys 0.1s, output queue size 68151
progress 80% @chr17:42324927, elapsed 0.9s, est remaining 0.2s, peak mem 297MB, user 0.0s, sys 0.1s, output queue size 78846
progress 85% @chr19:5680458, elapsed 1.0s, est remaining 0.2s, peak mem 324MB, user 0.0s, sys 0.1s, output queue size 89255
progress 90% @chr19:55731999, elapsed 1.0s, est remaining 0.1s, peak mem 324MB, user 0.0s, sys 0.1s, output queue size 98751
progress 95% @chr22:36932722, elapsed 1.5s, est remaining 0.1s, peak mem 2337MB, user 5.8s, sys 5.4s, output queue size 3224
progress 100% @chrY:25624455, elapsed 1.6s, est remaining 0.0s, peak mem 2337MB, user 5.9s, sys 5.4s, output queue size 30
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290594
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.559 user 0.136 sys 2.243 real
done: 1 calls 0.316 user 0.158 sys 0.479 real
execute: 1 calls 0.000 user 0.010 sys 1.562 real
fetch_reads: 208647 calls 0.081 user 0.003 sys 0.178 real
fetch_ref: 2072 calls 0.023 user 0.022 sys 0.051 real
fetch_vcf: 2072 calls 0.746 user 0.078 sys 0.952 real
idle: 92 calls 0.003 user 0.002 sys 31.726 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.278 user 5.096 sys 10.319 real
overall: 2450640896 mem 9.632 user 10.605 sys 2.966 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory