File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/168fd8f23776e60275fd952e551cbf/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:158000001, elapsed 0.1s, est remaining 1.4s, peak mem 96MB, user 0.1s, sys 1.6s, output queue size 59
progress 10% @chr2:91000001, elapsed 0.1s, est remaining 1.2s, peak mem 96MB, user 0.1s, sys 3.5s, output queue size 19
progress 15% @chr2:227000001, elapsed 0.2s, est remaining 1.1s, peak mem 96MB, user 0.3s, sys 5.2s, output queue size 49
progress 20% @chr3:174000001, elapsed 0.3s, est remaining 1.0s, peak mem 96MB, user 0.4s, sys 7.1s, output queue size 22
progress 25% @chr4:138000001, elapsed 0.3s, est remaining 1.0s, peak mem 96MB, user 0.4s, sys 8.9s, output queue size 63
progress 30% @chr5:107000001, elapsed 0.4s, est remaining 0.9s, peak mem 96MB, user 0.6s, sys 10.9s, output queue size 67
progress 35% @chr6:52000001, elapsed 0.5s, est remaining 0.8s, peak mem 96MB, user 0.7s, sys 12.7s, output queue size 65
progress 40% @chr7:79000001, elapsed 0.5s, est remaining 0.8s, peak mem 96MB, user 0.8s, sys 14.6s, output queue size 63
progress 45% @chr8:47000001, elapsed 0.6s, est remaining 0.7s, peak mem 96MB, user 0.9s, sys 16.5s, output queue size 19
progress 50% @chr9:93000001, elapsed 0.6s, est remaining 0.6s, peak mem 96MB, user 1.0s, sys 18.4s, output queue size 62
progress 55% @chr10:80000001, elapsed 0.7s, est remaining 0.6s, peak mem 96MB, user 1.1s, sys 20.2s, output queue size 15
progress 60% @chr11:116000001, elapsed 0.8s, est remaining 0.5s, peak mem 96MB, user 1.3s, sys 22.0s, output queue size 23
progress 65% @chr13:38000001, elapsed 0.8s, est remaining 0.4s, peak mem 96MB, user 1.6s, sys 23.6s, output queue size 33
progress 70% @chr14:52000001, elapsed 0.9s, est remaining 0.4s, peak mem 96MB, user 1.7s, sys 25.4s, output queue size 21
progress 75% @chr16:4000001, elapsed 1.0s, est remaining 0.3s, peak mem 96MB, user 1.8s, sys 27.2s, output queue size 29
progress 80% @chr17:72000001, elapsed 1.0s, est remaining 0.3s, peak mem 96MB, user 1.9s, sys 28.9s, output queue size 30
progress 85% @chr20:47000001, elapsed 1.1s, est remaining 0.2s, peak mem 96MB, user 2.0s, sys 30.7s, output queue size 11
progress 90% @chrX:34000001, elapsed 1.2s, est remaining 0.1s, peak mem 96MB, user 2.5s, sys 32.0s, output queue size 114
progress 95% @chrY:38000001, elapsed 1.3s, est remaining 0.1s, peak mem 108MB, user 3.0s, sys 33.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.8s, est remaining 0.0s, peak mem 132MB, user 4.2s, sys 35.8s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 52290594
reads: 1001133
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.613 user 18.142 sys 20.739 real
done: 1 calls 0.001 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.002 sys 1.765 real
idle: 81 calls 0.004 user 0.017 sys 43.581 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 138567680 mem 4.473 user 36.474 sys 2.931 real