[2026-05-27T23:55:49.934807Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:49.935616Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:49.935631Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:49.935635Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:49.935640Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqvMkuM'
[2026-05-27T23:55:49.935644Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:49.935649Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:49.935654Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:49.935658Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-27T23:55:49.935662Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:49.935665Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:49.935669Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:49.935672Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:49.935676Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:49.936557Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:49.936634Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:49.942888Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:49.943753Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:49.944108Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:49.944376Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:49.944883Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.945375Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.945476Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.945551Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.945674Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.945874Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.946037Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.946246Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.946675Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.947054Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.947278Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.950432Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.951310Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.951695Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:49.952201Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.953499Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.953949Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.954214Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.954408Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.954539Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955045Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955311Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955430Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955505Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955621Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955684Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955807Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.955877Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.956049Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.956121Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.956233Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.956332Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.956550Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.956647Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.956833Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.957192Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.957602Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.957669Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.957784Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.957844Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.957959Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.958018Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.958128Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.958190Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.958797Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.959286Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.959487Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.959672Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.959803Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.959874Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.959995Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.960075Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.960253Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.960423Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961009Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961091Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961337Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961481Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961603Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961673Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961787Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.961849Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.962309Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.962771Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.962937Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.963021Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.963142Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.963207Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.976919Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.977050Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.977126Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.977313Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.977384Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.977472Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.977551Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.979324Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.979430Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:49.979480Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:49.984435Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.985210Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.985680Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.986029Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.987050Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.990567Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.990903Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T23:55:49.991395Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.992327Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.993606Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.998388Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:50.002639Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:50.010017Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T23:55:50.015449Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T23:55:50.015773Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T23:55:50.016272Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:50.112046Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.113028Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.119923Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T23:55:50.880595Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.881767Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.885418Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:50.996613Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.997461Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.001697Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T23:55:52.416491Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.417417Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.421153Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T23:55:52.482212Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.482329Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.482394Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.483334Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.483709Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.486391Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.487046Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:52.492215Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T23:55:52.493358Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:52.496703Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.497443Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.500666Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:52.530000Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.530879Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.534548Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T23:55:52.563353Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.564480Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.567702Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T23:55:52.629255Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.630370Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.634605Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T23:55:52.895869Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.896841Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.900302Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T23:55:52.961905Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.963251Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.967438Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:53.186843Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T23:55:53.228534Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.228624Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.230138Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.233144Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.234092Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T23:55:53.237626Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T23:55:53.298504Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.299489Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.303076Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T23:55:53.764943Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.766384Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.769768Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T23:55:53.798579Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.799369Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.801328Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.802135Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.802613Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:53.805898Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T23:55:53.834796Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.835630Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.839230Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:53.900071Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.900822Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.904522Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T23:55:53.965496Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.966477Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.970574Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:54.031225Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.032000Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.035548Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T23:55:54.147090Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.147933Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.152343Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T23:55:54.263548Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.264579Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.268766Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T23:55:54.329257Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.330177Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.333712Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T23:55:54.595138Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.595885Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.599162Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T23:55:54.660751Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.661498Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.664732Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T23:55:54.725709Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.726723Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.730242Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:55.342620Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.343288Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.346537Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:55.407519Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.408255Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.411495Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T23:55:55.623273Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.623979Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.627689Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T23:55:55.656508Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.657910Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.658401Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.660929Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.661493Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:55.664748Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:55.725335Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.725404Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.726184Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.726503Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.729992Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T23:55:55.731487Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:55.790678Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.790748Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.791261Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.791640Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.795110Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:55.796537Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T23:55:55.855846Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.855922Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.856551Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.857032Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.860758Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:55.862453Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:55.921629Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.922455Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.926260Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:55.987031Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.987961Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.991634Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T23:55:56.052762Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.053590Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.058147Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T23:55:56.118030Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.118864Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.122591Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T23:55:56.183553Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.183642Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.184422Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.184834Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.189095Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T23:55:56.240957Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T23:55:56.249727Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.249822Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.250564Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.250913Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.255303Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T23:55:56.256902Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:56.316163Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.316920Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.320693Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T23:55:56.381366Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.382105Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.385955Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T23:55:56.547166Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.547777Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.551330Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:56.612336Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.612939Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.616643Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T23:55:56.677550Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.741998Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.742628Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.746474Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T23:55:56.807279Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.871428Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.872036Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.876148Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T23:55:56.936802Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.401757Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.402399Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.406697Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T23:55:57.467108Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.831796Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.832463Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.835788Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T23:55:57.896802Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.061135Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.061620Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.064708Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T23:55:58.125839Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.125895Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.126333Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.129060Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:58.190191Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.205781Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.206107Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.209669Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:58.270291Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.270523Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.270657Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.271095Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.271596Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.276201Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:58.278112Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.278886Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:58.337514Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.337553Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.337576Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.337789Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.338108Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.341241Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.342099Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:58.402306Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.402387Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.402652Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:58.405868Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:58.434515Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:56:00.502308Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:08.824996Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:08.824996Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] 
[2026-05-27T23:56:08.824996Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:08.825097Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] 
[2026-05-27T23:56:08.825105Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:08.825113Z] [nf-209262da25d1c867fc66d97d39f5745d-b1d1f-w2mp5] [612_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec