Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5cc8c80d26a4f3fe52220445eef847/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/c0a67c1d98a52e016e1ee4b829f9ba/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/c0a67c1d98a52e016e1ee4b829f9ba/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5cc8c80d26a4f3fe52220445eef847/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T23:55:48.927086Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:48.928632Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:48.928656Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:48.928663Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:48.928668Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXSD4ZHW'
[2026-05-27T23:55:48.928673Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:48.928678Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:48.928682Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:48.928685Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-27T23:55:48.928688Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:48.928692Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:48.928696Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:48.928699Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:48.928703Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:48.929616Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:48.929672Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:48.935900Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:48.936615Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:48.936909Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:48.937324Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:48.938761Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.939663Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.939907Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.940150Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.940426Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.941094Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.941490Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.941655Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.941788Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.942167Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.945095Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.945739Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.945875Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.946176Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:48.946317Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.946418Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.946533Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.946709Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.946976Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947042Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947238Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947305Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947418Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947486Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947599Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947659Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947775Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947837Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.947959Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.948109Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.948451Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.948666Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.948973Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.949220Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.949572Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.949637Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.949746Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.949808Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.949919Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.949980Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950088Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950152Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950263Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950327Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950432Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950496Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950682Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.950858Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951455Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951803Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951915Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.951978Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952114Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952177Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952285Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952346Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952460Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952524Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952689Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952759Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.952907Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.953039Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.953547Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.953612Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.953722Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.953800Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.953906Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.953970Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.954078Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.954144Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.954334Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.954401Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.954514Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.955728Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.968325Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.968428Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.968504Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.968767Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.968839Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.968990Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.969060Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.969172Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.969245Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:48.969293Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:48.976268Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.976959Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.977203Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.980015Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.982478Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T23:55:48.982739Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.983363Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T23:55:48.983994Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.984557Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.985198Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.986346Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.990821Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T23:55:48.996780Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:48.999614Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T23:55:49.004968Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T23:55:49.007951Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:49.010693Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:49.106880Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.109736Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.110274Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.114457Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.114692Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:49.120567Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:49.229458Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.230525Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.234807Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T23:55:50.046919Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.047787Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.051090Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T23:55:50.212476Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.213360Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.217077Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:50.328291Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.328391Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.329219Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.329588Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.334301Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T23:55:50.335540Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T23:55:50.395299Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.396346Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.400238Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T23:55:50.461566Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.462531Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.466815Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T23:55:50.627861Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.628751Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.631503Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:50.692906Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.693765Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.697090Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T23:55:51.209258Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.210371Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.214637Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T23:55:51.275514Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.276693Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.280574Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T23:55:51.341699Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.342923Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.346766Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:51.359229Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.360183Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.363978Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T23:55:51.424522Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.425592Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.428864Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T23:55:51.433649Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.434559Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.437637Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T23:55:51.499103Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.500222Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.503791Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T23:55:51.865331Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.866546Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.870251Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T23:55:51.981412Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.982486Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.986228Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T23:55:52.247587Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.248410Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.252023Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:52.563324Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.564452Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.569097Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T23:55:52.629947Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.630033Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.630759Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.631175Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.635950Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T23:55:52.637453Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T23:55:52.697071Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.697928Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.701454Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T23:55:52.763758Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.763865Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.764551Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.765544Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.770469Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T23:55:52.771513Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T23:55:52.833381Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.833503Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.834246Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.834985Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.839097Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T23:55:52.840095Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T23:55:52.901255Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.901359Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.902180Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.902831Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.907868Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:52.909658Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T23:55:52.912356Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.913032Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.916095Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T23:55:52.977242Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.977996Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.982263Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T23:55:52.994983Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.995751Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.999779Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T23:55:53.061897Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.062661Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.066650Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T23:55:53.127737Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.127818Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.128491Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.128913Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.132160Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T23:55:53.133262Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T23:55:53.193165Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.193843Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.196674Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T23:55:53.759192Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.759317Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.760144Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.760797Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.764656Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T23:55:53.765884Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:53.825533Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.825618Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.825649Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.826478Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.827054Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.827533Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.833485Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T23:55:53.834643Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T23:55:53.837386Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T23:55:53.861558Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.862445Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.866150Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T23:55:53.870871Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.871994Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.872567Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.873746Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.877723Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T23:55:53.878359Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T23:55:53.938447Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.938560Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.939123Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.939902Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.943397Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T23:55:53.977299Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:54.004492Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.005070Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.008581Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.009292Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.009974Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T23:55:54.013506Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T23:55:54.074578Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.075447Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.079447Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T23:55:54.140237Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.141001Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.144799Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T23:55:54.205402Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.205498Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.205527Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.206364Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.206794Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.209520Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.213653Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T23:55:54.214424Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T23:55:54.217026Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T23:55:54.276461Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.276590Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.277492Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.278039Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.282787Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T23:55:54.283585Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:54.342867Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.343637Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.347290Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T23:55:54.408246Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.123569Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.124217Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.127673Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T23:55:55.156308Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.156833Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.160704Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T23:55:55.173507Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.205812Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.671196Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.671756Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.674839Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T23:55:55.736234Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.000686Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.001240Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.004658Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T23:55:56.066234Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.381069Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.381604Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.385292Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T23:55:56.446522Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.560819Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.561344Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.565112Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T23:55:56.626253Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.141263Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.141811Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.145449Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T23:55:57.206449Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.206745Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.206917Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.207173Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.207521Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.213216Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:57.215056Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:57.216697Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:57.240939Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.241218Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.244207Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:57.249073Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.252351Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.252490Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.255620Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:57.284194Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.285387Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.285518Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.288388Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:57.317534Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:59.535715Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:07.817837Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:07.817837Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] 
[2026-05-27T23:56:07.817837Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:07.817927Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] 
[2026-05-27T23:56:07.817941Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:07.817948Z] [nf-135cc8c80d26a4f3fe52220445eef847-3d106-prnll] [621_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec