Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/9ccd56aab41525008828abc44f9187/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/c4ab70cd0462681d725647f4082e13/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/c4ab70cd0462681d725647f4082e13/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/9ccd56aab41525008828abc44f9187/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T23:55:50.857712Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:50.890923Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:50.890968Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:50.890974Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:50.890979Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXDe2jui'
[2026-05-27T23:55:50.890984Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:50.890991Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:50.890996Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:50.891000Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T23:55:50.891004Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:50.891009Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:50.891013Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:50.891017Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:50.891022Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:50.891600Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:50.891719Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:50.897817Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:50.898593Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:50.898792Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:50.899064Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:50.899284Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.900167Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.900363Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.900599Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.901036Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.901252Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.901909Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.902438Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.902650Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.902958Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.904808Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.905545Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:50.905634Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.905776Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.905964Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.906075Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.906252Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.906397Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.906765Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907099Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907380Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907482Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907645Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907740Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907904Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.907999Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.908812Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.909044Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.909579Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.909708Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.909890Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.909999Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.910193Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.910291Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.910461Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.910562Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.910757Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.911027Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.911541Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.911648Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.911882Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.911998Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.912186Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.912288Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.912494Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.912697Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.913331Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.913551Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.913751Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.913866Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.914037Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.914134Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.914532Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.914992Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.915186Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.915285Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.915459Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.915561Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.915729Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.915830Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.916061Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.916705Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.916904Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.917008Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.937762Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.938391Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.938644Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.938726Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.939665Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.939891Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.939987Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.940254Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.940755Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.940858Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.941375Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.941696Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:50.943627Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.943791Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:50.944393Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.945568Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.946620Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.947749Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.949211Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.955357Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T23:55:50.956723Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T23:55:50.959698Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T23:55:50.964214Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T23:55:50.966964Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T23:55:50.969316Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T23:55:50.972699Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T23:55:50.973276Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T23:55:51.086792Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.086862Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.086885Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.086914Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.087590Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.087825Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.088144Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.088649Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.092979Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T23:55:51.097237Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T23:55:51.098756Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T23:55:51.154231Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.155817Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.159921Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T23:55:51.172902Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.173630Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.177036Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T23:55:51.237999Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.239052Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.242092Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T23:55:51.303249Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.303332Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.304070Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.304472Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.307421Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T23:55:51.308324Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T23:55:51.336452Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.337191Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.339700Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T23:55:51.369029Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.369796Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.372393Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T23:55:51.401718Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.402608Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.405877Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T23:55:51.410611Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.411509Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.414287Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T23:55:51.744888Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T23:55:51.776075Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.776190Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.777076Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.777427Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.780673Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T23:55:51.781894Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T23:55:51.841515Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.841597Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.841645Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.842525Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.842795Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.843174Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.847679Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T23:55:51.848924Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T23:55:51.850055Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T23:55:52.107704Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.108676Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.111843Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T23:55:52.523579Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.523709Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.524619Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.525165Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.528719Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T23:55:52.529315Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T23:55:52.589769Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.590723Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.594132Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T23:55:52.654918Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.655013Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.655833Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.656259Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.659886Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T23:55:52.661255Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T23:55:52.688482Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.689344Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.692426Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T23:55:52.853538Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.854490Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.857570Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:52.918561Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.919441Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.922543Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T23:55:52.983478Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.984371Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.987261Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T23:55:52.988276Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.989112Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.991565Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T23:55:53.004811Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.005585Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.008185Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T23:55:53.021292Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.021360Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.022126Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.022421Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.025839Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T23:55:53.026982Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T23:55:53.038526Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.039307Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.041907Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T23:55:53.071179Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.071254Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.072012Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.072282Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.075318Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T23:55:53.076501Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T23:55:53.136498Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.136591Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137301Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.137594Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.141193Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T23:55:53.169699Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.170414Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.173150Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T23:55:53.234497Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.234576Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.235092Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.235763Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.238820Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T23:55:53.239748Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T23:55:53.268091Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.268819Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.271539Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T23:55:53.272550Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.273260Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.275434Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T23:55:53.337151Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.337253Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.337893Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.338242Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.341396Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:53.342117Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T23:55:53.402344Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.402427Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.403054Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.403401Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.406367Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T23:55:53.407738Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T23:55:53.467343Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.468039Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.470936Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T23:55:53.532222Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.532910Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.535521Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T23:55:53.564824Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.565584Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.566052Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.568883Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T23:55:53.630658Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.195775Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.196418Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.199065Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T23:55:54.260398Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.260499Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.261114Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.263767Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T23:55:54.292972Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.471526Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T23:55:54.507446Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.508108Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.511072Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T23:55:54.540196Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.540275Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.540848Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.543183Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T23:55:54.572654Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.837098Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.837689Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.840797Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T23:55:54.869716Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.184221Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.184849Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.187312Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T23:55:55.248764Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.249135Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.249323Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.249847Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.250259Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.255702Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:55.257622Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:55.258352Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:55.314570Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.314646Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.314678Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.314944Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.315216Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.318419Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:55.319835Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:55.347542Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.351066Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.351348Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.353832Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:55.383282Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:56.599281Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:01.427153Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:01.427153Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] 
[2026-05-27T23:56:01.427153Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:01.427254Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] 
[2026-05-27T23:56:01.427265Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:01.427274Z] [nf-b49ccd56aab41525008828abc44f9187-c43ca-7kspn] [756_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec