File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/7813a9982c88577764a4db5633717f/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-28T05:36:28.365353Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:28.366458Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:28.366482Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:28.366487Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:28.366491Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqv41y2'
[2026-05-28T05:36:28.366495Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:28.366500Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:28.366503Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:28.366507Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-28T05:36:28.366510Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:28.366514Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:28.366517Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:28.366521Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:28.366525Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:28.367591Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:28.367649Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:28.373405Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:28.374128Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:28.374480Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:28.374602Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:28.374827Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375104Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375193Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375292Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375427Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375494Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375610Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375671Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375850Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.375954Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.376350Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.376658Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.376737Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.377010Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.377307Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.377921Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.379435Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.380301Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:28.380819Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.381463Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.381763Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.381857Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.381991Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.382064Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.382179Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.382349Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.382481Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.382546Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.382858Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383220Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383362Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383462Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383579Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383642Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383755Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383819Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.383991Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.384063Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.384176Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.384369Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.384771Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.384835Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.384947Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.385014Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.385522Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.385597Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.385712Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.385774Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.386029Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.386392Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.386500Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.386572Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.387092Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.387154Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.387403Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388258Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388375Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388439Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388550Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388613Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388724Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388783Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388891Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.388959Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.389065Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.389135Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.389248Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.389334Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.404823Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.405283Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.405377Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.405579Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.405651Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.405742Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.405812Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.407321Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.407420Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:28.407476Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:28.410115Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.411012Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.411379Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.411899Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.412479Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.415078Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:28.415409Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.415962Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.416398Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.417049Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.420931Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:28.425715Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:28.427949Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:28.428528Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:28.432682Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:28.434366Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:28.435413Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:28.534821Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.534942Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.534975Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.535850Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.536186Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.536844Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.542768Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:28.542906Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:28.546820Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:29.255222Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.256198Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.259483Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:29.621253Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.622084Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.625161Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:29.686641Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.687534Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.691205Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:30.303498Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.304397Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.307925Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:30.920544Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.921397Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.924885Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:31.186687Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.187484Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.191365Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:31.191624Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.192341Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.196103Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:31.224620Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.224718Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.225530Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.226179Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.230318Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.230666Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:31.231336Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:31.231962Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.234659Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:31.264047Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.264806Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.267870Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:31.328964Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.329708Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.332964Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:31.394207Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.394972Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.398814Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:31.559796Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.560569Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.563577Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:31.624633Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.625511Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.628772Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:31.990630Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.991392Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.994648Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:32.007709Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.008372Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.011829Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:32.072788Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.073542Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.076794Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:32.288494Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.288605Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.289267Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.289928Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.293451Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:32.294326Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:32.356993Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.357101Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.357750Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.358336Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.362147Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:32.363396Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:32.423091Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.423184Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.424075Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.424743Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.425383Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.425897Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.429261Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:32.430751Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:32.431825Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:32.491841Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.491954Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.491992Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.492621Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.493309Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.494052Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.497512Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:32.499040Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:32.500142Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:32.558290Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.558414Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.558442Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.559057Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.559806Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.560500Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.564250Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:32.566291Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:32.567910Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:32.627066Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.627186Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.627814Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.628574Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.632835Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:32.633274Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.633977Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.634500Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:32.636981Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:32.666532Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.667154Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.670678Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:32.732627Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.733290Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.736591Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:32.998063Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.998721Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.001707Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:33.063129Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.063876Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.067815Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:33.128161Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.128804Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.131971Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:33.193395Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.194006Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.197862Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:34.110690Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.111258Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.114470Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:34.225793Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.226401Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.230217Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:34.290932Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.291523Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.295060Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:34.556391Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.556967Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.559268Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.559801Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.560148Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:34.562861Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:34.624348Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.624875Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.627828Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:34.689179Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.689675Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.692907Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:34.722163Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.722705Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.723245Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.725349Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.725852Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:34.728780Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:34.757783Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.765471Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.879730Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.880190Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.882837Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:34.944322Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.944786Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.947433Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:35.008825Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.024748Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.025163Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.027655Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:35.089115Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.089185Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.089554Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.091947Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:35.154682Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.154754Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.155122Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.157766Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:35.187050Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.301147Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.301551Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.304056Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:35.365666Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.080875Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.081259Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.083892Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:36.113275Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.113506Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.113623Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.114197Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.114816Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.117024Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:36.117836Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:36.120235Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:36.149456Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.149515Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.149537Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.149714Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.150243Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.151748Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:36.154172Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:36.183214Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.183274Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.183436Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.185678Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:36.215527Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:38.934735Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:47.256232Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:47.256232Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] 
[2026-05-28T05:36:47.256232Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:47.256298Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] 
[2026-05-28T05:36:47.256306Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:47.256313Z] [nf-ed7813a9982c88577764a4db5633717f-82d84-jrt59] [659_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec