cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:186000001, elapsed 0.3s, est remaining 6.6s, peak mem 343MB, user 0.6s, sys 8.0s, output queue size 33
progress 10% @chr2:98000001, elapsed 0.6s, est remaining 5.6s, peak mem 445MB, user 1.4s, sys 16.3s, output queue size 45
progress 15% @chr2:238000001, elapsed 0.9s, est remaining 5.2s, peak mem 574MB, user 2.2s, sys 24.5s, output queue size 35
progress 20% @chr3:180000001, elapsed 1.2s, est remaining 4.8s, peak mem 667MB, user 2.9s, sys 32.7s, output queue size 34
progress 25% @chr4:83000001, elapsed 1.5s, est remaining 4.5s, peak mem 760MB, user 3.7s, sys 41.2s, output queue size 32
progress 30% @chr5:102000001, elapsed 1.8s, est remaining 4.1s, peak mem 814MB, user 4.3s, sys 49.2s, output queue size 29
progress 35% @chr6:82000001, elapsed 2.0s, est remaining 3.8s, peak mem 910MB, user 4.8s, sys 57.1s, output queue size 23
progress 40% @chr7:54000001, elapsed 2.3s, est remaining 3.5s, peak mem 976MB, user 5.5s, sys 64.8s, output queue size 22
progress 45% @chr8:26000001, elapsed 2.6s, est remaining 3.1s, peak mem 1105MB, user 6.1s, sys 72.4s, output queue size 31
progress 50% @chr9:76000001, elapsed 2.8s, est remaining 2.8s, peak mem 1186MB, user 6.8s, sys 79.9s, output queue size 25
progress 55% @chr10:105000001, elapsed 3.1s, est remaining 2.5s, peak mem 1234MB, user 7.2s, sys 87.5s, output queue size 20
progress 60% @chr11:134000001, elapsed 3.3s, est remaining 2.2s, peak mem 1288MB, user 7.6s, sys 95.0s, output queue size 32
progress 65% @chr13:27000001, elapsed 3.6s, est remaining 1.9s, peak mem 1333MB, user 8.0s, sys 102.4s, output queue size 4
progress 70% @chr14:58000001, elapsed 3.8s, est remaining 1.6s, peak mem 1402MB, user 8.4s, sys 109.7s, output queue size 26
progress 75% @chr16:22000001, elapsed 4.1s, est remaining 1.4s, peak mem 1435MB, user 8.8s, sys 116.5s, output queue size 5
progress 80% @chr18:2000001, elapsed 4.3s, est remaining 1.1s, peak mem 1498MB, user 8.9s, sys 123.2s, output queue size 5
progress 85% @chr20:11000001, elapsed 4.5s, est remaining 0.8s, peak mem 1591MB, user 9.3s, sys 129.9s, output queue size 16
progress 90% @chrX:43000001, elapsed 4.9s, est remaining 0.5s, peak mem 2755MB, user 12.4s, sys 133.3s, output queue size 114
progress 95% @chrY:43000001, elapsed 5.2s, est remaining 0.3s, peak mem 2782MB, user 15.7s, sys 136.7s, output queue size 276
progress 100% @chr21:41000001, elapsed 7.2s, est remaining 0.0s, peak mem 2797MB, user 27.0s, sys 141.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51395364
output file size: 71692776
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.002 user 0.000 sys 0.029 real
ReadQualCal::delayed_init: 1 calls 0.003 user 0.000 sys 0.019 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.898 user 17.421 sys 19.609 real
done: 1 calls 0.322 user 0.229 sys 0.553 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.009 user 0.000 sys 7.216 real
fetch: 3219322 calls 0.366 user 16.873 sys 17.375 real
fetch_reads: 3219322 calls 0.552 user 17.335 sys 17.468 real
fetch_ref: 13103 calls 0.062 user 0.011 sys 0.071 real
fetch_vcf: 13103 calls 1.088 user 0.154 sys 1.486 real
idle: 1459 calls 0.683 user 0.262 sys 82.913 real
init: 1 calls 0.003 user 0.000 sys 0.026 real
update: 13298 calls 5.978 user 1.823 sys 8.581 real
write: 3219322 calls 8.875 user 17.810 sys 26.380 real
overall: 2933862400 mem 30.401 user 142.674 sys 8.610 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.010 sys 0.025 real
done: 1 calls 0.050 user 0.010 sys 0.055 real
idle: 61 calls 0.003 user 0.000 sys 31.355 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.070 user 0.042 sys 1.055 real