File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/921798dce5a192aa40ffdd6fa2b189/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-28T05:36:14.141891Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:14.142665Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:14.142675Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:14.142679Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:14.142683Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXS8byup'
[2026-05-28T05:36:14.142687Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:14.142693Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:14.142697Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:14.142701Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:14.142705Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:14.142709Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:14.142712Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:14.142716Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:14.142720Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:14.143028Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:14.143155Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:14.148919Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:14.149561Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:14.149932Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:14.150068Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:14.150264Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.150960Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.151051Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.151125Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.151244Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.151312Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.151790Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.152189Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.152518Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.154297Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.154699Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.154957Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.155037Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:14.155195Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.155315Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.155379Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.155491Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.155702Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156018Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156264Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156466Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156545Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156658Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156726Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156838Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.156900Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.157020Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.157090Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.157202Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.157275Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.157519Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158162Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158278Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158339Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158447Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158508Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158659Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158725Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158835Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.158897Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.159010Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.159072Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.159395Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.159733Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.160013Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.160385Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.160519Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.160650Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.160763Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.160826Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.160937Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.161000Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.161109Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.161172Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.161287Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.161348Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.161520Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162121Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162243Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162308Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162425Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162489Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162598Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162661Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162768Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162834Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.162955Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.163016Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.163138Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.163347Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.163881Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.163947Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.164054Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.164117Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.181408Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.182058Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.182221Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.182414Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.182748Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.183413Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.183529Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.183705Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.184106Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.184332Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.184703Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.184979Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.185258Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.185781Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.186028Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.186762Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.187156Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:14.187817Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.189210Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.195399Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:14.199970Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:14.201329Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:14.201466Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:14.205218Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-28T05:36:14.208346Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:14.209979Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:14.210530Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:14.272812Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.272897Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.272924Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.273680Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.274393Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.274714Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.278562Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:14.280367Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-28T05:36:14.281495Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:15.042565Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.043493Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.047222Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-28T05:36:15.108190Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.109138Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.112409Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:15.173253Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.174141Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.176915Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-28T05:36:15.589801Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.590688Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.593778Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-28T05:36:15.655215Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.656113Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.658905Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:15.720535Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.720650Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.721455Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.721858Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.724938Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:15.725973Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.726284Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:15.727216Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.727412Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.729701Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.730211Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:15.732445Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-28T05:36:15.761793Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.761884Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.762636Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.763083Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.766338Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:15.766890Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.767588Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:15.768084Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.769814Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.770503Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:15.770749Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.773215Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:15.802613Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.803378Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.806110Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-28T05:36:15.819714Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.820511Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.823513Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-28T05:36:16.135704Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.136542Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.139343Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:16.251016Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.251912Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.254910Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:16.316665Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.317498Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.320457Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-28T05:36:16.325304Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.325971Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.329120Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:16.358230Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.359027Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.361939Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:16.423510Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.424316Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.427673Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:16.489146Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.489950Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.493112Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:16.554408Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.555240Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.558440Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:16.770251Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.770361Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.771087Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.771462Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.774254Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-28T05:36:16.775490Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:16.804772Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.805521Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.808544Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-28T05:36:16.809103Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.809674Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.812205Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:16.841860Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.842711Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.843114Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.844169Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.847395Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-28T05:36:16.848611Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:17.160953Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.161708Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.164994Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:17.226138Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.226225Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.226810Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.227075Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.230148Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:17.231339Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-28T05:36:17.242959Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.243654Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.246589Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-28T05:36:17.259717Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.260405Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.263154Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-28T05:36:17.276346Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.277024Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.279615Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:17.309178Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.309280Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.309919Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.310236Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.313355Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:17.314524Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:17.342307Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.342963Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.345872Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-28T05:36:17.346929Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.347510Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.350413Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:17.379558Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.380225Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.383148Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:17.594957Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.595634Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.598720Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:17.627725Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.628420Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.631206Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-28T05:36:17.692560Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.693172Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.696464Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:17.757688Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.758773Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.761408Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:17.774631Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.775544Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.778164Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-28T05:36:17.791465Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.792314Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.794929Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:17.808128Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.808225Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.808941Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.809288Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.812170Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-28T05:36:17.840528Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:17.842002Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.842117Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.842793Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.843135Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.846503Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:17.847429Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-28T05:36:17.957993Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.958125Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.959006Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.959475Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.962993Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:17.990632Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-28T05:36:17.992011Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.992721Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.995810Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:18.024828Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.025605Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.028466Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:18.440760Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.441608Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.444735Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:18.473877Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.638543Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.639282Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.642784Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:18.671720Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.287773Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.288587Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.291449Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-28T05:36:19.320871Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.535509Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.536014Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.539155Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:19.600791Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.664904Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.665444Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.668431Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-28T05:36:19.697443Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.698264Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.698601Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.701500Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:19.763019Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.027960Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.028488Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.031103Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:20.092742Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.157141Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.157661Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.160830Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-28T05:36:20.222053Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.222402Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.222594Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.222863Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.223138Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.227489Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:20.228748Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:20.229781Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:20.287790Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.287878Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.287908Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.288180Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.288675Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.291540Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:20.292458Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:20.321187Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.321280Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.321533Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.324254Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:20.354090Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.780075Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:33.031088Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:33.031088Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] 
[2026-05-28T05:36:33.031088Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:33.031164Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] 
[2026-05-28T05:36:33.031178Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:33.031185Z] [nf-4d921798dce5a192aa40ffdd6fa2b189-3bdbc-xc74h] [645_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec