File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/960d7cab940a8409f4cceba563eaae/.command.log
Size
8.4 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/2cd518123e7a350174af4af0da1783/HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/2b2d12f729366dd1f01bfb75f68401/Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/f5ac995e42c3ba884f0c223d52af48/Sig_18_Blood.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/bf07145e3ad2b4cfadb983c954e27d/HCC1395_tumor.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/c7da557488ca8f0d75cde31158c06c/HCC1395_BL.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/b8ef39561d3ed75534dd5096326627/HCC1395_BL_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/c0f56e828920b2d26922f2a28ee31c/HCC1395_BL_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/365029a83c061869c99426b5fb4a6d/Sig_18_Blood.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/d8fd91d3cbfb26317ea19e8a2c595f/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/ac4d293173ef2e04fdb571a5323385/HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b63cf14f6e5f4bfcf2c4e3a9a82355/Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/1a3da6b2cb49c71700352afbed28b9/HCC1395_tumor_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/eec8e8d269493a02ff433e94311c6c/HCC1395_tumor.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/4cda3d8380d81a131f7541788b0452/Sig_18_tissue_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/bc9461c97c6ad60ac00e445f17666d/Sig_18_tissue.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/e39f28c498aa5b51617cc44a5e5c47/Sig_18_tissue.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/687501aea5e3d5e2edcd53735ee02c/Sig_18_tissue_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/d1ddedb42e4dcbd2f09acf61ec9660/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/493758e94bfdb80bc36d2eecd74fe1/Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/91d63c8b92c0f72a4945a6eac1ebf3/HCC1395_tumor.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/8ec11b85a58167554b5e770e28827b/Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/9d6f76ec658ca540cd7fce8671181a/Sig_18_Blood.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/4a5d18eab9f6f061c3079725aca5e6/HCC1395_tumor_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/960d7cab940a8409f4cceba563eaae/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/a68ddb8291e5b732834cc38b6a35c4/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/f9357664767ca5c376f946ca09c347/HCC1395_BL_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/5cd7c265b2cc076d03b95fd466ac67/Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/cae5b0867959466241b8b8bd288314/Sig_18_Blood_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/af2d018a4cc0baf102296ec07fb1b0/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/0ee7e5e0a444dfb5ec498ba036fc34/Sig_18_Blood_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/960d7cab940a8409f4cceba563eaae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/0a33d4d46975befe99c4fca38ac41f/HCC1395_tumor_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/41fb86cbc06bb62c1c38f0d931bc2e/HCC1395_BL.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/69f9aa1d7d1106b9013e13d29ba94b/HCC1395_BL.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/fa733e5df79619877287cae0d8b541/Sig_18_tissue.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/17839c7cd94e7024e90e9be39889cd/HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/c9a66aecd4487f985b9b7b84cd0b05/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/3001613d8fa500a6eb594323396623/Sig_18_Blood_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/74249e119f8b2c90d400e77ba8faf0/HCC1395_tumor_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/1c9cfe3bf1dfd071b5e9cef9f75506/Sig_18_Blood_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/326dab9d15d181ea58c5f39c93d57d/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/21ac4342bebe8d9d5ab1176ecf1635/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/4484766d7097cdab811803b5e2e01c/HCC1395_tumor_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/e650ff1b83f989b2ae25470f086eba/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/e61a7974c3a13c4447cfb5cf5c80dc/HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/113018ae13214ca195430ca605c8a9/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/30125b03789d366fd7bc51b1c0a0d2/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/e6f60921068b4a14a6897d2f3906b3/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/01f26f09b864b45a0c410795f5b1f8/Sig_18_tissue_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/970d8a879f4a8a1da262bf36d091bb/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
==> STAGING COMPLETE (50 inputs)

Post-dedup QC aggregation complete: 4 samples
Tools: samtools, mosdepth, sentieon, seqtool
Output: postdedup_qc.json