Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/1c4626280035bbf97da54cdf8da69f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1efc95d887ebdaf1c9892b5421119a/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1efc95d887ebdaf1c9892b5421119a/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/1c4626280035bbf97da54cdf8da69f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:26.068901Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:26.070185Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:26.070215Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:26.070221Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:26.070226Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqrT8j6'
[2026-05-28T05:36:26.070230Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:26.070235Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:26.070239Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:26.070243Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-28T05:36:26.070246Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:26.070250Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:26.070254Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:26.070257Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:26.070261Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:26.071215Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:26.071276Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:26.077024Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:26.077885Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:26.078032Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:26.078313Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:26.078475Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079232Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079325Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079400Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079518Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079590Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079727Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079863Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.079994Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.080195Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.080561Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.080629Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.080861Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.081110Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.081517Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.082095Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.082281Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.083958Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.084123Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.084930Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.085143Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:26.086158Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.086811Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.086961Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.087120Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.087231Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.087656Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.087742Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.087997Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.088531Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.088704Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.088781Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.088908Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.088972Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.089084Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.089150Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.089259Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.089462Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090094Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090186Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090363Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090431Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090549Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090612Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090720Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.090849Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091297Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091427Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091545Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091614Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091720Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091784Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091891Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.091951Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.092061Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.092121Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.092230Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.092297Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.092618Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.093063Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.093179Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.093238Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.093347Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.093410Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.108690Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.108788Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.108855Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.109010Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.109083Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.109318Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.109842Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.109949Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.110013Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.110058Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:26.115244Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.115802Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.117344Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.118126Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.120888Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.123275Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:26.124328Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:26.124518Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.130247Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.130677Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-28T05:36:26.133295Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.133835Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-28T05:36:26.134146Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.139572Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-28T05:36:26.140430Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:26.143045Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:26.246222Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:26.249466Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.249547Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.250287Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.251225Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.252147Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.254978Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.255529Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-28T05:36:26.257919Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-28T05:36:26.259535Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:26.319714Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.320540Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.324187Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-28T05:36:26.328644Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.329388Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.332853Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:26.444408Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.445328Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.448567Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-28T05:36:26.861016Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.861863Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.865115Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-28T05:36:27.026830Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.027717Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.030835Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-28T05:36:27.092205Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.093093Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.096399Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:27.157630Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.158473Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.162285Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-28T05:36:27.223145Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.223990Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.227485Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-28T05:36:27.389019Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.389141Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.389900Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.390711Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.394989Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-28T05:36:27.396032Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:27.425855Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.426667Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.430480Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-28T05:36:27.435003Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.435752Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.439453Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-28T05:36:27.468251Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.469098Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.472665Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-28T05:36:27.533648Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.534467Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.538051Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-28T05:36:27.799902Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.800729Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.804817Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-28T05:36:27.865322Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.866158Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.869729Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:27.930991Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.931801Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.935201Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:27.996206Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.996976Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.000381Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-28T05:36:28.061572Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.062317Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.065873Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:28.127031Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.127149Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.127812Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.128383Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.132031Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-28T05:36:28.133612Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:28.194915Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.195032Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.195798Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.196581Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.200568Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:28.201543Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-28T05:36:28.262970Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.263660Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.267280Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:28.328306Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.329042Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.332719Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:28.394035Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.394702Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.398313Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-28T05:36:28.459299Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.459423Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.460053Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.460391Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.463781Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:28.465066Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-28T05:36:28.524899Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.525047Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.525779Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.526609Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.530489Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:28.531387Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-28T05:36:28.593325Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.594191Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.597938Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:28.658625Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.659475Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.662636Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-28T05:36:28.723606Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.724442Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.727831Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-28T05:36:28.788659Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.788759Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.789506Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.790185Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.794287Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-28T05:36:28.795082Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-28T05:36:28.854525Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.855406Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.859072Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-28T05:36:28.969877Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.970684Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.973776Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:29.034876Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.035597Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.038914Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:29.099915Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.100649Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.104983Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:29.165041Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.165811Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.168938Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-28T05:36:29.230208Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.230954Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.234137Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-28T05:36:29.294969Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.295821Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.299572Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:29.312003Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.312618Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.316219Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-28T05:36:29.344981Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.345540Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.349125Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-28T05:36:29.353866Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.354363Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.357566Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-28T05:36:29.418857Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.483398Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.483893Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.487420Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:29.516558Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.517109Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.520210Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-28T05:36:29.533301Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.565618Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.629850Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.630354Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.633640Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-28T05:36:29.694878Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.909607Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.910154Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.913424Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-28T05:36:29.974901Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.390116Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.390689Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.393596Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:30.454820Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.519015Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.519509Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.522800Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-28T05:36:30.527605Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.528056Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.530842Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-28T05:36:30.592501Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.592604Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.592846Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.593019Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.593629Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.594355Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.598653Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:30.600132Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:30.601457Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:30.628894Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.629196Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.630283Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.630487Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.632183Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.633830Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:30.634699Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:30.696836Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.696941Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.697197Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.700593Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:30.762113Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.728852Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:36.606898Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:36.606898Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] 
[2026-05-28T05:36:36.606898Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:36.606952Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] 
[2026-05-28T05:36:36.606960Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:36.606966Z] [nf-851c4626280035bbf97da54cdf8da69f-3dbfd-mjxxt] [626_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec