cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:101760685, elapsed 0.0s, est remaining 0.7s, peak mem 82MB, user 0.1s, sys 0.0s, output queue size 1148
progress 10% @chr15:40902616, elapsed 0.1s, est remaining 0.6s, peak mem 90MB, user 0.1s, sys 0.1s, output queue size 3383
progress 15% @chr15:63774694, elapsed 0.1s, est remaining 0.6s, peak mem 103MB, user 0.1s, sys 0.3s, output queue size 6005
progress 20% @chr15:87989891, elapsed 0.1s, est remaining 0.6s, peak mem 114MB, user 0.1s, sys 0.4s, output queue size 8296
progress 25% @chr16:1950844, elapsed 0.2s, est remaining 0.5s, peak mem 118MB, user 0.1s, sys 0.5s, output queue size 9977
progress 30% @chr16:23482923, elapsed 0.2s, est remaining 0.5s, peak mem 130MB, user 0.1s, sys 0.7s, output queue size 12455
progress 35% @chr16:66536964, elapsed 0.2s, est remaining 0.5s, peak mem 138MB, user 0.1s, sys 0.9s, output queue size 15059
progress 40% @chr16:89279067, elapsed 0.3s, est remaining 0.4s, peak mem 147MB, user 0.2s, sys 1.1s, output queue size 17535
progress 45% @chr17:10303394, elapsed 0.3s, est remaining 0.4s, peak mem 160MB, user 0.2s, sys 1.3s, output queue size 20149
progress 50% @chr17:36260780, elapsed 0.4s, est remaining 0.4s, peak mem 172MB, user 0.3s, sys 1.4s, output queue size 22744
progress 55% @chr17:45120325, elapsed 0.4s, est remaining 0.3s, peak mem 180MB, user 0.3s, sys 1.5s, output queue size 24996
progress 60% @chr17:68420189, elapsed 0.4s, est remaining 0.3s, peak mem 192MB, user 0.4s, sys 1.7s, output queue size 27521
progress 65% @chr18:5489001, elapsed 0.5s, est remaining 0.3s, peak mem 204MB, user 0.4s, sys 1.9s, output queue size 30237
progress 70% @chr18:62574057, elapsed 0.5s, est remaining 0.2s, peak mem 213MB, user 0.4s, sys 2.0s, output queue size 32615
progress 75% @chr19:6906433, elapsed 0.6s, est remaining 0.2s, peak mem 220MB, user 0.4s, sys 2.2s, output queue size 35004
progress 80% @chr19:15256064, elapsed 0.6s, est remaining 0.1s, peak mem 229MB, user 0.4s, sys 2.3s, output queue size 37261
progress 85% @chr19:36949512, elapsed 0.6s, est remaining 0.1s, peak mem 241MB, user 0.5s, sys 2.4s, output queue size 1294
progress 90% @chr19:46493558, elapsed 0.7s, est remaining 0.1s, peak mem 250MB, user 0.5s, sys 2.6s, output queue size 3463
progress 95% @chr20:36916678, elapsed 0.7s, est remaining 0.0s, peak mem 262MB, user 0.5s, sys 2.7s, output queue size 6101
progress 100% @chr20:64273221, elapsed 0.8s, est remaining 0.0s, peak mem 270MB, user 0.5s, sys 2.9s, output queue size 8539
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586815
output file size: 22311
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.000 sys 0.018 real
advance: 49760 calls 0.019 user 0.013 sys 0.021 real
calc: 97912 calls 0.002 user 0.006 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.010 user 0.000 sys 1.403 real
fetch: 97912 calls 0.001 user 0.016 sys 0.018 real
fetch_ref: 97912 calls 0.067 user 0.031 sys 0.355 real
idle: 39 calls 0.003 user 0.005 sys 20.295 real
init: 1 calls 0.040 user 0.000 sys 0.042 real
region: 97912 calls 0.000 user 0.003 sys 0.021 real
tracker: 97912 calls 0.022 user 0.016 sys 0.086 real
overall: 283385856 mem 1.066 user 4.581 sys 2.524 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory