Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/d00f6f5c426a9bd8717a9a4b6ab052/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/d00f6f5c426a9bd8717a9a4b6ab052/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fd07f3bccb2b3e7b5521fe26c79365/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fd07f3bccb2b3e7b5521fe26c79365/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:20.250549Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:20.251297Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:20.251320Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:20.251328Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:20.251336Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX5zPhVz'
[2026-05-28T05:36:20.251343Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:20.251352Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:20.251359Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:20.251366Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] memMb: 386571
[2026-05-28T05:36:20.251373Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:20.251379Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:20.251386Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:20.251393Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:20.251400Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:20.251888Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:20.252046Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:20.262323Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:20.263170Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:20.263582Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:20.263798Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:20.264127Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.266052Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.266401Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.266769Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.266986Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.267502Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.267809Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.270404Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.270736Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:20.270872Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.271145Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.271296Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.271803Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.271938Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.272155Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.272278Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.272489Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.272612Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.272822Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.273029Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.273678Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.274181Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.274670Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.274807Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.275020Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.275144Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.275368Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.275499Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.275763Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.275949Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.276676Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.276853Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.277580Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.277755Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.278483Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.279153Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.279396Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.279529Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.279739Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.279857Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.280070Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.280193Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.280435Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.280620Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.281524Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.282324Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.282656Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.282795Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.283015Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.283142Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.283352Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.284267Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.284496Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.284618Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.284829Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.284950Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.307994Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.308288Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.308564Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.309415Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.309744Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.310064Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.310287Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.310398Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.310837Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.310916Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.311559Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.311966Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.312415Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.312895Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:20.313616Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.314089Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:20.314625Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.317463Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.318597Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.323813Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-28T05:36:20.327073Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-28T05:36:20.330065Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:20.330544Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:20.334048Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-28T05:36:20.337976Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-28T05:36:20.339515Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-28T05:36:20.341041Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-28T05:36:20.439416Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.440488Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.444468Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:20.448439Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.449492Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.454278Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-28T05:36:20.514594Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.515778Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.519769Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-28T05:36:22.235627Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.235714Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.236652Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.237116Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.240976Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-28T05:36:22.242627Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-28T05:36:22.552858Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.553981Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.557304Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:22.668525Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.669595Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.673297Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:22.784282Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.785393Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.788628Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:22.849887Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.850989Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.854331Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-28T05:36:22.915597Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.916700Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.919903Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-28T05:36:23.131635Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.132670Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.136184Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-28T05:36:23.198033Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.199074Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.202830Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-28T05:36:23.715253Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.716324Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.719668Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-28T05:36:23.830907Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.831960Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.835414Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-28T05:36:23.896326Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.897317Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.900563Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:23.961686Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.962661Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.966152Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-28T05:36:24.327849Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.328805Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.332121Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-28T05:36:24.393116Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.394064Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.397374Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-28T05:36:24.458413Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.459380Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.463038Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-28T05:36:24.467574Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.468470Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.471755Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:24.532789Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.533680Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.537096Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:24.565916Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.566824Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.570328Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-28T05:36:24.582949Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.583825Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.587203Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-28T05:36:24.616161Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.617054Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.620272Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:25.333639Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.334443Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.337759Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-28T05:36:25.398732Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.398859Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.399647Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.399989Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.403531Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-28T05:36:25.404322Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-28T05:36:25.464371Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.464511Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.465318Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.465757Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.470190Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-28T05:36:25.471308Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-28T05:36:25.981495Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.982329Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.985386Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-28T05:36:26.046667Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.047500Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.050655Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-28T05:36:26.111926Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.112781Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.116182Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:26.128977Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.129728Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.132750Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-28T05:36:26.193917Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.194026Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.194095Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.194798Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.195129Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.195771Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.199342Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-28T05:36:26.200823Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-28T05:36:26.202616Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-28T05:36:26.260592Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.260719Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.261424Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.261789Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.265281Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-28T05:36:26.266358Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:26.326416Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.327180Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.330275Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-28T05:36:26.359343Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360383Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.363493Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-28T05:36:26.424492Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.892009Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.892137Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.893111Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.893607Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.897143Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-28T05:36:27.898286Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-28T05:36:27.958136Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.958269Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.173016Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.174052Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.177100Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-28T05:36:28.238154Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.703421Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.704381Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.707609Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-28T05:36:28.768728Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.933320Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.934266Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.937309Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-28T05:36:28.998396Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.964523Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.965441Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.968431Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:30.029503Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.494670Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.495396Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.498175Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-28T05:36:30.559645Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.560189Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.560341Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.560888Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.561417Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.565570Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:30.568153Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:30.595526Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:30.626004Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.626075Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.626109Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.626398Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.626678Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.629200Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:30.630174Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:30.690879Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.690949Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.691203Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.694635Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:30.756083Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.870537Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:39.140378Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:39.140378Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] 
[2026-05-28T05:36:39.140378Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:39.140450Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] 
[2026-05-28T05:36:39.140462Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:39.140490Z] [nf-4ed00f6f5c426a9bd8717a9a4b6ab052-54c8f-xtgkz] [758_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec