Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/18e247d4576deb3c3cda9beac9c672/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/18e247d4576deb3c3cda9beac9c672/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXBfNuR2/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXBfNuR2/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXBfNuR2/chr4_22420786-22421189.bed.gz.tbi
[2026-05-28T05:36:25.981226Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:25.982607Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:25.982631Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:25.982637Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:25.982642Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBfNuR2'
[2026-05-28T05:36:25.982646Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:25.982651Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:25.982655Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:25.982659Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-28T05:36:25.982663Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:25.982666Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:25.982670Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:25.982675Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:25.982679Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:25.983295Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:25.983390Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:25.989346Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:25.989979Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:25.990387Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:25.990716Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.991002Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:25.991417Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.991513Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.991584Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.991701Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.991780Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.992224Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.992357Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.992576Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.993264Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.993487Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.993741Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.995023Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.995481Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.995578Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.995701Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.995772Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.995888Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.996058Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:25.996466Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.996933Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.997100Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.997568Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.997651Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.997787Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.997857Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.997990Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998060Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998177Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998240Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998347Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998413Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998536Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998626Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.998812Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.999005Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.999463Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.999865Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:25.999978Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000045Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000156Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000218Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000328Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000390Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000496Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000588Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000699Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.000762Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.001001Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.001492Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.001604Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.001670Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.001779Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.001872Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.001983Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.002042Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.002152Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.002217Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.002324Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.002389Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.002542Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.003882Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004080Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004147Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004254Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004321Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004433Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004492Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004643Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004710Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004822Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.004891Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.005002Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.005124Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.007658Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.007917Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008045Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008115Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008227Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008291Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008400Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008458Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008570Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008634Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008743Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008809Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.008933Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.009064Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.009781Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.009847Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.009989Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.010059Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.010164Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.010263Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.010378Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.010436Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.028447Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.028896Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.029045Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.029503Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.030115Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.030237Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.030380Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.030598Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.030926Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.031017Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.031446Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.031645Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.031855Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.032274Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:26.032872Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.033631Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.034204Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.034937Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.036233Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.042314Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:26.043125Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-28T05:36:26.048187Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-28T05:36:26.052739Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:26.056260Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:26.057627Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-28T05:36:26.060140Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:26.167767Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.168707Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.172493Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-28T05:36:27.229293Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:27.235497Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.235595Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.236831Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.237285Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.240999Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:27.242377Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:27.302067Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.302156Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.303464Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.304053Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.308479Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:27.309663Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-28T05:36:27.569160Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.570585Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.573817Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:27.602793Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.604187Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.608424Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:28.019828Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.021197Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.024660Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:28.286092Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.286207Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.287223Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.287720Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.292307Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-28T05:36:28.293262Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:28.604826Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.605993Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.608910Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:28.670395Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.671432Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.675440Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:28.736457Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.737521Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.740687Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-28T05:36:28.801968Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.802983Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.805793Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:28.867125Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.867223Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.867271Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.868223Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.868526Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.870520Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.871343Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:28.874528Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:28.876155Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-28T05:36:28.936054Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.937097Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.940051Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:29.001745Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.002808Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.006677Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:29.168045Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.169062Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.172204Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:29.235194Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.236280Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.239297Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:29.268492Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.269480Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.272726Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-28T05:36:29.334146Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.335273Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.339473Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:29.400049Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.401041Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.404951Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-28T05:36:29.916950Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.917934Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.921628Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-28T05:36:30.383884Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.384883Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.388633Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:30.449666Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.450624Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.453878Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-28T05:36:30.515150Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.516160Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.519560Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-28T05:36:30.580819Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.580937Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.581780Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.582103Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.585622Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-28T05:36:30.587629Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:30.600454Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.601402Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.605161Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:30.635133Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.636139Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.639160Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:30.645265Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.645355Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.646108Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.646744Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.650489Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:30.651764Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:30.680848Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.681759Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.683830Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.684716Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.685005Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-28T05:36:30.687794Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:30.717461Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.718289Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.720929Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:30.783712Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.784597Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.787847Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:30.849176Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.850063Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.853564Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:31.065491Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.066272Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.069206Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:31.130727Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.131596Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.135560Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-28T05:36:31.196675Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.197544Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.200900Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:31.562885Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.563730Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.566998Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-28T05:36:31.628106Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.628962Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.632338Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:31.693459Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.694226Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.697271Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-28T05:36:31.758665Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.759494Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.762935Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:31.823991Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.824096Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.824851Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.825589Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.829085Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:31.830157Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:31.833646Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.834346Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.837305Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:31.866697Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.867481Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.870476Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:31.875445Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.876147Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.878882Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:31.908189Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.908956Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.911600Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.911716Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.912251Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-28T05:36:31.912858Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.914208Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.916335Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:31.917415Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-28T05:36:31.946946Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.947713Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.950977Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:31.955839Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.956612Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.957368Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.957434Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.958408Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.960092Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.961153Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-28T05:36:31.963566Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-28T05:36:31.964559Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:32.025444Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.026194Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.029544Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:32.190929Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.191606Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.194896Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:32.357052Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.357976Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.358605Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.359373Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.362534Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:32.397606Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-28T05:36:32.424884Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.424986Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.425744Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.426449Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.430378Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:32.432066Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-28T05:36:32.793547Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.794284Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.797500Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-28T05:36:32.858790Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.858880Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.859514Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.860108Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.863127Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:32.864246Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:32.924706Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.925500Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.928465Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-28T05:36:32.957607Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.958263Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.961121Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:33.022492Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.023197Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.027447Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-28T05:36:33.138376Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.139072Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.142418Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:33.203849Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.204520Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.208106Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:33.319076Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.319764Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.322717Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:33.384424Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.385089Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.388096Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:33.449654Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.450296Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.454043Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-28T05:36:33.482680Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.483309Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.486478Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:33.487219Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.487717Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.490293Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:33.503647Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.504207Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.506759Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-28T05:36:33.520267Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.520803Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.523683Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:33.524722Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.525238Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.528286Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:33.542649Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.543254Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.546476Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:33.559638Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.559710Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.875209Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.875905Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.878782Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-28T05:36:33.941843Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.056128Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.056618Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.059488Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:34.072663Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.073144Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.075996Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-28T05:36:34.105450Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.107007Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.622058Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.622554Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.626153Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-28T05:36:34.686785Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.750859Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.751296Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.753887Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:34.784463Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.299447Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.299895Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.302308Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:35.363838Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.364104Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.364222Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.364810Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.365161Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.370071Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:35.370461Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:35.371227Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:35.398224Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.398298Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.398323Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.398532Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.400305Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.402526Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:35.403679Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:35.433232Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.433305Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.433479Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.435613Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:35.465600Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.632027Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:44.870908Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:44.870908Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] 
[2026-05-28T05:36:44.870908Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:44.870970Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] 
[2026-05-28T05:36:44.870978Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:44.870985Z] [nf-8418e247d4576deb3c3cda9beac9c672-7abd6-zv4wx] [621_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec