File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/aa8b40963adf6651389f4b0b0f2575/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/02718e86eff8a2d9a131a839cf928e/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/aa8b40963adf6651389f4b0b0f2575/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/02718e86eff8a2d9a131a839cf928e/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/aa8b40963adf6651389f4b0b0f2575/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:10.526004Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:10.556237Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:10.556289Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:10.556294Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:10.556300Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXaD2Ie9'
[2026-05-28T05:36:10.556304Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:10.556310Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:10.556314Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:10.556319Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:10.556323Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:10.556327Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:10.556330Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:10.556334Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:10.556338Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:10.557640Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:10.557709Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:10.563719Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:10.564504Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:10.564712Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:10.565167Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:10.565438Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.566191Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.566287Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.566483Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.566731Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.566893Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.566998Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.567365Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.567664Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.567956Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.568134Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.570481Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:10.570589Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.570697Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.570818Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.570881Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.570992Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.571056Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.571170Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.571233Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.571350Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.571485Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.571801Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.572092Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.572343Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.572634Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.573413Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.573480Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.573590Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.573657Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.573767Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.573872Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.574020Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.574089Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.574346Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.574675Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.574788Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.574855Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.574989Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575049Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575161Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575237Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575346Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575411Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575521Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575583Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575710Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.575933Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576357Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576423Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576558Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576625Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576735Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576795Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576907Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.576970Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.577082Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.577147Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.577255Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.577335Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.577591Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.578059Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.578173Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.578240Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.594393Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.594727Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.594800Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.594968Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.595041Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.595128Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.595197Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.595307Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.595376Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.595428Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:10.599523Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.600103Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.601690Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.602076Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.602710Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.604821Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.605113Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:10.605784Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.606430Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.607309Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.612203Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:10.616663Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-28T05:36:10.619500Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:10.619745Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:10.623587Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:10.624981Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-28T05:36:10.672654Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.673947Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.674278Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.675924Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.679131Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-28T05:36:10.680001Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-28T05:36:10.680396Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-28T05:36:10.681099Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.681159Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.681787Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.682147Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.685294Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:10.687983Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-28T05:36:10.716900Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.717602Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.720881Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:10.832291Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.833123Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.836375Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-28T05:36:11.098302Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.099133Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.102358Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-28T05:36:11.264226Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.265032Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.267967Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-28T05:36:11.329373Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.330155Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.333170Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:11.394296Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.395062Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.398451Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-28T05:36:11.559747Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.560577Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.563463Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-28T05:36:11.624761Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.624876Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.625508Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.625900Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.629189Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-28T05:36:11.629993Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:11.658557Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.659248Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.662070Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:11.691208Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.691987Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.694780Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-28T05:36:12.107365Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.108156Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.111254Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-28T05:36:12.172483Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.173213Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.176112Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-28T05:36:12.205557Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.206270Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.208949Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-28T05:36:12.213962Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.214583Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.217168Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-28T05:36:12.246576Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.246682Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.247292Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.247605Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.250538Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:12.251707Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-28T05:36:12.279581Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.280240Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.283088Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-28T05:36:12.312542Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.313214Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.316463Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-28T05:36:12.577986Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.578068Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.578093Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.578628Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.578910Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.579468Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.582535Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:12.584092Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:12.585382Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-28T05:36:12.596653Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.597285Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.600248Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-28T05:36:12.613329Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.613405Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.613915Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.614187Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.617146Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-28T05:36:12.617394Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-28T05:36:12.646746Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.646813Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.647359Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.647585Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.651195Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:12.651710Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:12.680224Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.680844Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.683826Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-28T05:36:12.712695Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.712759Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.712787Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.713287Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.713598Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.714186Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.716257Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-28T05:36:12.718710Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:12.719400Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-28T05:36:12.747895Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.748479Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.751135Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-28T05:36:12.764246Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.764306Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.764770Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765036Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.768100Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-28T05:36:12.769126Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-28T05:36:12.829069Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.829652Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.833081Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-28T05:36:12.893887Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.894527Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.897879Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:12.958848Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.959463Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.963254Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:13.024354Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.024489Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.025032Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.025355Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.028663Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-28T05:36:13.029187Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:13.057724Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.058300Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.060275Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.060922Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.061210Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:13.063676Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:13.125234Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.125313Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.125347Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.125850Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.126259Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.126518Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.129880Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:13.132081Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-28T05:36:13.159196Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:13.191266Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.191349Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.191378Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.191921Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.192190Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.195234Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:13.196268Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-28T05:36:13.256789Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.256912Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.321117Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.321691Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.324825Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:13.354007Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.354436Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.357142Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-28T05:36:13.362150Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.393966Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.558360Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.558848Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.562103Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-28T05:36:13.623125Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.623237Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.623641Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.626359Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-28T05:36:13.655603Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.719608Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.720049Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.722895Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-28T05:36:13.752383Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.752679Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.752829Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.753118Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.753509Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.757056Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:13.758440Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:13.759345Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:13.785589Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.785644Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.785664Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.785895Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.786175Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.788723Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:13.789527Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:13.818085Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.818171Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.818392Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821208Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:13.850427Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.221332Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:21.096013Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:21.096013Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] 
[2026-05-28T05:36:21.096013Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:21.096077Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] 
[2026-05-28T05:36:21.096085Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:21.096091Z] [nf-e8aa8b40963adf6651389f4b0b0f2575-1fe06-qk4wf] [570_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec