Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/6a9bae9081976c550e020278c952b4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/6a9bae9081976c550e020278c952b4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fd07f3bccb2b3e7b5521fe26c79365/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fd07f3bccb2b3e7b5521fe26c79365/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:18.464358Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:18.465314Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:18.465342Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:18.465348Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:18.465353Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXO8bJ9N'
[2026-05-28T05:36:18.465357Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:18.465363Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:18.465366Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:18.465371Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-05-28T05:36:18.465375Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:18.465378Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:18.465382Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:18.465386Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:18.465390Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:18.466087Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:18.466226Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:18.472406Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:18.473338Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:18.473493Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:18.473991Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:18.474372Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.475086Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.475183Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.475258Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.475381Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.475481Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.475800Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.476254Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.476492Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.476786Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.477479Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.480057Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.480513Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.480798Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:18.480989Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.481073Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.481188Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.481264Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.481415Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.481685Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.482157Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.482228Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.482342Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.482410Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.482521Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.482583Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.483005Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.483083Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.483510Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.483778Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.483894Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.483963Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484084Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484148Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484261Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484325Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484436Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484499Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484616Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484693Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.484859Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.485140Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.485564Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.485679Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.485790Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.485860Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.485976Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.486040Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.486240Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.486307Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.486416Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.486480Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.486846Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487295Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487415Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487478Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487599Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487666Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487774Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487837Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.487951Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.488012Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.488121Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.488187Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.505371Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.505515Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.505595Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.505774Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.505849Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.506091Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.506687Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.506803Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.506877Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:18.506930Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:18.517863Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.518554Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.518978Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.519405Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.520369Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.521142Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.522269Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.524902Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.525745Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-28T05:36:18.526456Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.533777Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:18.536805Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-28T05:36:18.540308Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-28T05:36:18.542904Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:18.544879Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-28T05:36:18.547963Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-28T05:36:18.548196Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:18.643623Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.644410Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.648755Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-28T05:36:18.649083Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.649849Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.654056Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:18.714765Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.715592Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.719115Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:18.830380Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.831196Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.835293Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:18.896326Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.897193Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.900597Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:18.961646Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.962536Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.965775Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-28T05:36:19.177327Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.178141Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.181412Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:19.242573Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.243374Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.247078Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-28T05:36:19.358320Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.359237Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.362935Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-28T05:36:19.423929Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.424763Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.428024Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-28T05:36:19.739900Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.740843Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.743980Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:19.805509Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.805606Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.806491Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.806935Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.811016Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-28T05:36:19.812740Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:19.872240Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.872343Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.873255Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.873836Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.877825Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:19.879252Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-28T05:36:19.938757Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.939797Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.943044Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:20.004361Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.005380Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.008530Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-28T05:36:20.069706Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.070609Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.074070Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:20.135276Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.136141Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.140574Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:20.200677Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.201425Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.205302Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-28T05:36:20.416731Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.417471Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.420759Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:20.582415Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.583162Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.587216Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-28T05:36:20.587535Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.588201Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.591862Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:20.652734Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.653495Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.657601Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-28T05:36:21.019240Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.019951Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.023205Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:21.134940Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.135754Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.138909Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-28T05:36:21.200078Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.200164Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.200198Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.200820Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.201207Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.201541Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.205916Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-28T05:36:21.207400Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-28T05:36:21.208703Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:21.234995Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.235627Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.238749Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-28T05:36:21.251933Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.252553Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.256144Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-28T05:36:21.269042Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.269659Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.273430Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-28T05:36:21.285949Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.286590Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.289698Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:21.290317Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.290804Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.293759Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-28T05:36:21.306814Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.307407Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.311377Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-28T05:36:21.324058Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.324661Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.328512Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-28T05:36:21.333159Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.333750Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.337328Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-28T05:36:21.398021Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.398120Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.398791Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.399342Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.403249Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-28T05:36:21.404675Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-28T05:36:21.464606Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.465241Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.468877Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-28T05:36:21.529794Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.530393Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.533426Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:21.594905Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.595024Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.595542Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.595910Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.599154Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-28T05:36:21.600565Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:21.660544Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.660693Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.661207Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.662031Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.665786Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-28T05:36:21.699818Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-28T05:36:21.726785Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.726903Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.726928Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.727429Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.727792Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.728017Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.732784Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-28T05:36:21.734660Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:21.735704Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-28T05:36:21.795171Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.795268Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.795749Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.798691Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:21.803457Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.803821Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.806772Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-28T05:36:21.836243Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.844223Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.008730Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.009269Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.012434Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:22.017269Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.017734Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.020939Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-28T05:36:22.082345Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.082448Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.447370Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.447862Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.450745Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:22.512330Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.626859Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.627334Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.630577Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-28T05:36:22.692082Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.709012Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.709459Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.712117Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-28T05:36:23.773887Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.774166Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.774321Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.774847Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.775331Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.780072Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:23.781591Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:23.782978Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:23.808242Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.808535Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.811518Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:23.816655Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.816714Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.816909Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.819579Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:23.849126Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.849199Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.849394Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.851990Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:23.881672Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.146149Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:29.022684Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:29.022684Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] 
[2026-05-28T05:36:29.022684Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:29.022731Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] 
[2026-05-28T05:36:29.022737Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:29.022743Z] [nf-f66a9bae9081976c550e020278c952b4-f3be5-mpsdp] [597_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec