Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/02718e86eff8a2d9a131a839cf928e/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/6d40a6182e59667e8e6c6b9c415686/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/02718e86eff8a2d9a131a839cf928e/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/6d40a6182e59667e8e6c6b9c415686/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:09.932656Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:09.933363Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:09.933372Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:09.933376Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:09.933380Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXVQRj9Q'
[2026-05-28T05:36:09.933385Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:09.933390Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:09.933393Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:09.933397Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:09.933401Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:09.933404Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:09.933408Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:09.933411Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:09.933416Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:09.934021Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:09.934146Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:09.939946Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:09.940644Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:09.940928Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:09.941203Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:09.941561Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.941967Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.942093Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.942176Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.942313Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.942388Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.942725Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.943146Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.943408Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.943649Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.944069Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.944697Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.945146Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.947070Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.947191Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.947344Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.947491Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.947660Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:09.948018Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.948278Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.948477Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.948545Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.948656Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.948721Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.948832Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.948894Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.949026Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.949093Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.949204Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.949285Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.949654Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.949984Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950109Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950173Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950280Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950345Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950453Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950516Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950631Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950692Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950802Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950863Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.950970Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.951127Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.952105Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.952208Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.952337Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.952471Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.952598Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.952667Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.953013Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.953468Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.953580Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.953644Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.953757Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.953820Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.953937Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.954004Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.954109Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.954171Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.954283Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.954350Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.954460Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.954725Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.955276Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.955349Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.955462Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.955524Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.971140Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.971707Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.971837Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.972041Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.972356Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.973049Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.973223Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.973410Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.975118Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.975454Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.976008Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.976449Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.977182Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:09.977589Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.978107Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:09.978906Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.979893Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.982361Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.983048Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:09.983987Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.988453Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:09.992038Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:09.994472Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:09.997101Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:09.999374Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:10.001317Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:10.003577Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:10.063073Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.063151Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.063877Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.064136Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.069192Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:10.070157Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:10.681996Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.682848Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.685823Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:10.897675Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.898458Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.901557Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:11.765208Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.765991Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.769447Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:11.930822Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.931717Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.934633Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:11.947739Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.948508Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.951288Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:12.012737Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.012821Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.013530Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.013822Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.016905Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:12.017309Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:12.078081Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.078183Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.078865Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.079223Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.081827Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:12.082901Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:12.112522Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.113208Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.115649Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:12.177283Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.178031Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.180929Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:12.185633Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.186181Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.188574Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:12.218109Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.218174Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.218793Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.219533Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.222175Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:12.223384Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:12.252869Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.252953Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.253560Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.253988Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.256986Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:12.257521Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:12.286755Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.287434Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.290051Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:12.351689Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.351814Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.352474Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.352794Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.355685Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:12.356881Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:12.384807Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.385402Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.387793Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:12.417436Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.418076Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.420669Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:12.449963Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.450041Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.450628Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.451018Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.454114Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:12.455239Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:12.515364Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.516021Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.518577Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:12.580107Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.580748Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.583579Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:12.612746Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.613366Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.616271Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:12.645256Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.645851Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.649379Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:12.709988Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.711048Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.714180Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:12.743537Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.744135Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.746763Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:12.908545Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.908659Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.909271Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.909598Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.913116Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:12.939350Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:12.941876Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.942518Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.945698Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:12.950124Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.950616Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.953153Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:12.982499Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.983141Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.986082Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:12.999118Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.999767Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.002097Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:13.064027Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.064712Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.067679Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:13.080739Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.081334Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.084220Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:13.596927Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.597571Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.600758Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:13.812314Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.812958Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.815532Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:13.927302Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.927940Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.930856Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:14.544368Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.545026Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.547869Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:14.560873Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.561454Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.564392Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:14.593563Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.593656Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.594204Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.594498Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.597513Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:14.598685Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:14.658798Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.658881Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.659420Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.659733Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.662642Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:14.663880Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:14.724224Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.724327Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.724874Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.725229Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.728759Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:14.759140Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:14.789925Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.790030Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.790555Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.791003Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.793874Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:14.795083Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:14.855591Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.855685Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.856209Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.859129Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:14.920688Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.937339Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.938410Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.941278Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:15.002512Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.166878Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.167429Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.170672Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:15.231604Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.396361Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.396883Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.399870Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:15.429134Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.643718Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.644220Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.647179Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:15.676398Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.041292Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.041917Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.044528Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:16.106100Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.223443Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.223936Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.226651Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:17.288195Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.288516Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.288691Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.288981Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.289335Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.293504Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:17.294793Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:17.318253Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:17.322203Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.322280Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.322306Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.322564Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.322775Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.325550Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:17.326397Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:17.355055Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.355132Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.355373Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.358285Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:17.387654Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.560835Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:28.821866Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:28.821866Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] 
[2026-05-28T05:36:28.821866Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:28.821929Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] 
[2026-05-28T05:36:28.821937Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:28.821943Z] [nf-ad6d40a6182e59667e8e6c6b9c415686-a8d95-nftmx] [564_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec