Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/11663a86573f63438a8e925e4816d0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/87ddac6105e912c41c5948a7fc337e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/87ddac6105e912c41c5948a7fc337e/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qqnjclf6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-28 05:38:15,026 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-28 05:38:15,906 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-28 05:38:16,082 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-28 05:38:17,190 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-28 05:38:17,263 - cnv_pipe.batch.run_model - INFO - Processing cluster 89 with 82 probes
2026-05-28 05:38:17,648 - cnv_pipe.batch.run_model.cluster89 - INFO - Child process started for cluster 89 with 82 probes
2026-05-28 05:38:47,733 - cnv_pipe.batch.run_model.cluster89 - INFO - Child process finished cluster 89. Wrote cluster_89_samples.csv and cluster_89_params.csv
2026-05-28 05:38:47,733 - cnv_pipe.batch.run_model - INFO - Cluster 89 finished in 30.47 seconds. Status: SUCCESS