Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/11663a86573f63438a8e925e4816d0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/3e5b88c871720ee28a36442635f79a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/3e5b88c871720ee28a36442635f79a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-4n25qhzh because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-28 05:38:16,356 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-28 05:38:17,206 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-28 05:38:17,383 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-28 05:38:18,357 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-28 05:38:18,542 - cnv_pipe.batch.run_model - INFO - Processing cluster 101 with 119 probes
2026-05-28 05:38:18,928 - cnv_pipe.batch.run_model.cluster101 - INFO - Child process started for cluster 101 with 119 probes
2026-05-28 05:38:59,432 - cnv_pipe.batch.run_model.cluster101 - INFO - Child process finished cluster 101. Wrote cluster_101_samples.csv and cluster_101_params.csv
2026-05-28 05:38:59,433 - cnv_pipe.batch.run_model - INFO - Cluster 101 finished in 40.89 seconds. Status: SUCCESS