cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18362115, elapsed 0.1s, est remaining 1.2s, peak mem 78MB, user 0.0s, sys 0.2s, output queue size 1122
progress 10% @chr1:37761367, elapsed 0.1s, est remaining 1.1s, peak mem 84MB, user 0.1s, sys 0.4s, output queue size 3770
progress 15% @chr1:65392431, elapsed 0.2s, est remaining 1.0s, peak mem 96MB, user 0.1s, sys 0.7s, output queue size 6500
progress 20% @chr1:113837590, elapsed 0.2s, est remaining 1.0s, peak mem 105MB, user 0.1s, sys 1.0s, output queue size 9257
progress 25% @chr1:155250276, elapsed 0.3s, est remaining 0.9s, peak mem 120MB, user 0.2s, sys 1.2s, output queue size 11601
progress 30% @chr1:179102287, elapsed 0.3s, est remaining 0.8s, peak mem 132MB, user 0.3s, sys 1.5s, output queue size 14069
progress 35% @chr1:209789667, elapsed 0.4s, est remaining 0.7s, peak mem 141MB, user 0.3s, sys 1.7s, output queue size 16507
progress 40% @chr1:246986967, elapsed 0.5s, est remaining 0.7s, peak mem 141MB, user 0.3s, sys 2.0s, output queue size 18910
progress 45% @chr2:32543241, elapsed 0.5s, est remaining 0.6s, peak mem 159MB, user 0.3s, sys 2.3s, output queue size 21198
progress 50% @chr2:74461275, elapsed 0.6s, est remaining 0.6s, peak mem 171MB, user 0.4s, sys 2.6s, output queue size 23684
progress 55% @chr2:113499257, elapsed 0.6s, est remaining 0.5s, peak mem 180MB, user 0.4s, sys 2.9s, output queue size 26221
progress 60% @chr2:170996653, elapsed 0.7s, est remaining 0.5s, peak mem 189MB, user 0.4s, sys 3.2s, output queue size 28912
progress 65% @chr2:202779533, elapsed 0.7s, est remaining 0.4s, peak mem 204MB, user 0.5s, sys 3.3s, output queue size 31185
progress 70% @chr2:233779671, elapsed 0.8s, est remaining 0.3s, peak mem 207MB, user 0.6s, sys 3.6s, output queue size 1884
progress 75% @chr3:25638165, elapsed 0.9s, est remaining 0.3s, peak mem 222MB, user 0.6s, sys 3.8s, output queue size 4122
progress 80% @chr3:49807736, elapsed 0.9s, est remaining 0.2s, peak mem 225MB, user 0.6s, sys 4.0s, output queue size 6579
progress 85% @chr3:105539975, elapsed 1.0s, est remaining 0.2s, peak mem 240MB, user 0.7s, sys 4.3s, output queue size 9234
progress 90% @chr3:139578872, elapsed 1.0s, est remaining 0.1s, peak mem 246MB, user 0.7s, sys 4.5s, output queue size 11813
progress 95% @chr3:187942990, elapsed 1.1s, est remaining 0.1s, peak mem 252MB, user 0.8s, sys 4.8s, output queue size 14224
progress 100% @chr4:30721423, elapsed 1.1s, est remaining 0.0s, peak mem 261MB, user 0.8s, sys 5.0s, output queue size 16457
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692776
output file size: 22306
reads: 1001089
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.012 sys 0.016 real
advance: 51084 calls 0.003 user 0.022 sys 0.022 real
calc: 100735 calls 0.007 user 0.016 sys 0.015 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.001 sys 2.026 real
fetch: 100735 calls 0.000 user 0.000 sys 0.016 real
fetch_ref: 100735 calls 0.149 user 0.083 sys 0.367 real
idle: 39 calls 0.002 user 0.007 sys 23.056 real
init: 1 calls 0.037 user 0.009 sys 0.042 real
region: 100735 calls 0.000 user 0.000 sys 0.020 real
tracker: 100735 calls 0.050 user 0.013 sys 0.086 real
overall: 273813504 mem 1.290 user 6.894 sys 3.139 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory