cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:193000001, elapsed 0.0s, est remaining 0.8s, peak mem 286MB, user 0.1s, sys 2.2s, output queue size 102
progress 10% @chr2:84000001, elapsed 0.1s, est remaining 0.6s, peak mem 286MB, user 0.2s, sys 4.8s, output queue size 263
progress 15% @chr3:9000001, elapsed 0.1s, est remaining 0.5s, peak mem 286MB, user 0.3s, sys 7.5s, output queue size 358
progress 20% @chr3:159000001, elapsed 0.1s, est remaining 0.5s, peak mem 286MB, user 0.5s, sys 10.0s, output queue size 520
progress 25% @chr4:138000001, elapsed 0.1s, est remaining 0.4s, peak mem 286MB, user 0.6s, sys 12.6s, output queue size 681
progress 30% @chr5:109000001, elapsed 0.2s, est remaining 0.4s, peak mem 286MB, user 0.7s, sys 15.1s, output queue size 552
progress 35% @chr3:141000001, elapsed 0.2s, est remaining 0.3s, peak mem 286MB, user 0.8s, sys 17.5s, output queue size 713
progress 40% @chr7:67000001, elapsed 0.2s, est remaining 0.3s, peak mem 286MB, user 0.8s, sys 20.2s, output queue size 874
progress 45% @chr8:74000001, elapsed 0.2s, est remaining 0.3s, peak mem 286MB, user 0.9s, sys 22.8s, output queue size 1037
progress 50% @chr9:130000001, elapsed 0.3s, est remaining 0.3s, peak mem 286MB, user 1.0s, sys 25.4s, output queue size 1198
progress 55% @chr11:44000001, elapsed 0.3s, est remaining 0.2s, peak mem 286MB, user 1.1s, sys 26.9s, output queue size 1359
progress 60% @chr11:122000001, elapsed 0.3s, est remaining 0.2s, peak mem 286MB, user 1.2s, sys 29.3s, output queue size 1521
progress 65% @chr13:38000001, elapsed 0.4s, est remaining 0.2s, peak mem 286MB, user 1.3s, sys 31.9s, output queue size 1683
progress 70% @chr14:85000001, elapsed 0.4s, est remaining 0.2s, peak mem 286MB, user 1.4s, sys 34.4s, output queue size 1845
progress 75% @chr16:24000001, elapsed 0.4s, est remaining 0.1s, peak mem 286MB, user 1.6s, sys 36.9s, output queue size 2007
progress 80% @chr18:13000001, elapsed 0.4s, est remaining 0.1s, peak mem 286MB, user 1.7s, sys 39.4s, output queue size 2169
progress 85% @chr20:38000001, elapsed 0.5s, est remaining 0.1s, peak mem 286MB, user 1.9s, sys 42.0s, output queue size 2330
progress 90% @chrX:46000001, elapsed 0.5s, est remaining 0.1s, peak mem 286MB, user 2.1s, sys 44.4s, output queue size 2492
progress 95% @chrY:32000001, elapsed 0.5s, est remaining 0.0s, peak mem 286MB, user 2.2s, sys 46.9s, output queue size 2780
progress 100% @HLA-C*16:04:01:1, elapsed 0.6s, est remaining 0.0s, peak mem 287MB, user 2.4s, sys 56.1s, output queue size 2851
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000606a6
  features: 1f8bfbff fffa320b
  extended: f1bf07ab 00407f5a
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 128 max 128
algo: TNfilter
license: sentieon:TNhaplotyper=128
input file size: 51111
output file size: 43430
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.013 real
"predict_filter": 171 calls 0.014 user 0.000 sys 0.030 real
advance: 3219322 calls 0.469 user 23.013 sys 25.279 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.002 user 0.002 sys 0.712 real
fetch_ref: 460 calls 0.005 user 0.008 sys 0.009 real
idle: 19865 calls 0.828 user 0.526 sys 269.674 real
init: 1 calls 0.166 user 0.107 sys 1.104 real
overall: 301383680 mem 3.860 user 59.337 sys 2.840 real