Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/2c349f0467c116578563924e272c15/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/2c349f0467c116578563924e272c15/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/hotspots/hotspot_definitions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/21e5940f4c322e69f7db2524c3c692/positive_somatic_control_1.snv_indel.phased.vep.vcf.gz
==> STAGING COMPLETE (4 inputs)

Loaded 73 hotspot definitions
Processed 173 variants, labeled 0 as HOTSPOT