File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/1661c2df9774b1326480210f1439b4/.command.log
Size
3.8 KB
Task
DAQ:FLOWCELL_QC (REGRESSION)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/f538f4eb7b2cda54a9c8b9fa6ff6cd/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/cab5b86ae3faa00a37c81a79ea266d/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/c13a438be473b8bc28099700e6d238/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/c13a438be473b8bc28099700e6d238/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/e74db7339c69c30318d0b85935bf93/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/1661c2df9774b1326480210f1439b4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/f538f4eb7b2cda54a9c8b9fa6ff6cd/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/c13a438be473b8bc28099700e6d238/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/fab2bfc6c7d8dcd80624d87f15efb9/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/b5efd57720ac8f7da303e2508f60f8/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/cab5b86ae3faa00a37c81a79ea266d/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_daq/e2e_regression_bcl/rundir/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/fab2bfc6c7d8dcd80624d87f15efb9/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/5b7530e3b1879507cd8a4260a5bb74/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/5b7530e3b1879507cd8a4260a5bb74/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/cab5b86ae3faa00a37c81a79ea266d/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/5b7530e3b1879507cd8a4260a5bb74/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/e74db7339c69c30318d0b85935bf93/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/f538f4eb7b2cda54a9c8b9fa6ff6cd/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/5518a4363f82935c99d6db90d0147e/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/5518a4363f82935c99d6db90d0147e/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/b5efd57720ac8f7da303e2508f60f8/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/b5efd57720ac8f7da303e2508f60f8/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/fab2bfc6c7d8dcd80624d87f15efb9/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/5518a4363f82935c99d6db90d0147e/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/1661c2df9774b1326480210f1439b4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_daq/e2e_regression_bcl/rundir/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/e74db7339c69c30318d0b85935bf93/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (28 inputs)

INFO: InterOp files not provided, InterOp metrics will be null
Wrote flowcell_qc.csv with 7/13 metrics populated