[2026-05-28T05:36:10.519889Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:10.520574Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:10.520586Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:10.520591Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:10.520595Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXoUw6Z0'
[2026-05-28T05:36:10.520599Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:10.520605Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:10.520608Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:10.520612Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:10.520616Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:10.520619Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:10.520623Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:10.520626Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:10.520630Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:10.521018Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:10.521129Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:10.527042Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:10.527647Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:10.528034Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:10.528200Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:10.528397Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.528877Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.528965Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.529035Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.529153Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.529218Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.529335Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.529397Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.529724Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.529935Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.530124Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.530325Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.530403Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.530542Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.530879Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.531455Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.531561Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.531772Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.533320Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.533735Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:10.534259Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.534381Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.534506Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.534573Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.534681Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.534748Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.534860Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.534925Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535035Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535100Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535207Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535271Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535513Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535808Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535919Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.535983Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536098Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536162Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536298Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536361Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536469Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536530Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536638Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536702Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536811Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.536933Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.537453Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.537516Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.537685Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.537754Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.537867Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.537952Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.538059Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.538119Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.538228Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.538293Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.538403Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.538523Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539041Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539105Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539214Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539274Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539383Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539446Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539551Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539616Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539722Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.539784Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.540550Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.541078Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.541192Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.541255Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.541366Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.541430Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.542736Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.543504Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.543658Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.543726Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.543838Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.543901Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544012Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544076Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544201Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544271Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544388Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544454Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544586Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544659Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544963Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.545661Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.545777Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.545845Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.545951Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.546013Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.546125Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.546187Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.546301Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.546362Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.561786Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.562307Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.562523Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.562757Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.563771Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.564077Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.564249Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.564952Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.565187Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.565699Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.567282Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.567797Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:10.568498Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.568792Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.569767Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.570079Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.570804Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.571425Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:10.572300Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.573176Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:10.575339Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:10.580148Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:10.584230Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:10.586949Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-05-28T05:36:10.590113Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-05-28T05:36:10.591362Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-05-28T05:36:10.637945Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:10.655020Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.655101Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.655123Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.655150Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.656059Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.656395Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.656646Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.656833Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.661078Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:10.664879Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-05-28T05:36:10.665370Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-05-28T05:36:10.665748Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:10.721513Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.722610Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.725480Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-05-28T05:36:10.726493Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.727420Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.730259Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-05-28T05:36:11.142914Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.144044Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.147550Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-05-28T05:36:11.409537Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.410642Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.413536Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:11.474825Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.476391Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.479332Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-05-28T05:36:11.590800Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.592368Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.595454Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:11.756993Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.757088Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.758027Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.758313Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.761585Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-05-28T05:36:11.762570Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:11.790483Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.791539Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.794685Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:11.823776Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.824831Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.827821Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-05-28T05:36:11.841074Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.842041Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.844820Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-05-28T05:36:11.874207Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.875236Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.877998Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-05-28T05:36:12.390725Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.391803Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.395032Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-05-28T05:36:12.456982Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.458070Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.461356Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-05-28T05:36:12.622804Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.623852Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.626802Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-05-28T05:36:12.656451Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.657492Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.660354Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-05-28T05:36:12.673410Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.674401Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.677119Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-05-28T05:36:12.706640Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.706730Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.707690Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.707997Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.711020Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:12.712072Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:12.772413Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773493Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.776821Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-05-28T05:36:12.989020Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.990089Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.992922Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:13.054235Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.055239Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.058144Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:13.420366Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.421278Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.424112Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:13.453467Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.454446Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.457492Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:13.462139Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.462901Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.465785Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:13.495419Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.496416Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.499689Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:13.512924Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.513864Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.516443Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:13.545935Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.546913Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.550096Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-05-28T05:36:13.554912Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.555653Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.558310Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:13.587645Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.588568Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.591339Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-05-28T05:36:13.803399Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.804381Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.807234Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:13.868618Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.869588Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.872705Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:13.934120Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.935033Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.938668Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-05-28T05:36:13.943043Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.943821Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.946717Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-05-28T05:36:13.976148Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.977089Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.979993Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-05-28T05:36:13.993067Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.993964Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996954Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:14.010212Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.011050Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.014032Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:14.075290Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.075391Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.076223Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.076536Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.079516Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:14.080571Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-05-28T05:36:14.108903Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.109770Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.112885Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:14.141969Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.142908Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.146281Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:14.408188Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.409120Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.412067Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:14.441470Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.442337Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.445043Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:14.506312Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.506402Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.506427Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.507151Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.507426Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.507655Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.510838Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-05-28T05:36:14.512382Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:14.512878Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-05-28T05:36:14.540238Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.541069Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.543692Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:14.548894Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.548968Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.549669Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.550055Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.552513Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.553783Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-05-28T05:36:14.555042Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.555494Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:14.557748Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:14.587338Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.588131Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.591051Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-05-28T05:36:14.591947Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.592709Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.595394Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-05-28T05:36:14.596455Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.597124Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.599837Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-05-28T05:36:14.629159Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.629916Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.632625Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-05-28T05:36:14.662075Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.662928Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.666102Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:14.727140Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.727935Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.730827Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:14.942895Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.943664Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.946771Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-05-28T05:36:15.108428Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.108527Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.109232Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.109687Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.113258Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-05-28T05:36:15.113753Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-05-28T05:36:15.142059Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.142912Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.143468Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.145684Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.146228Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-05-28T05:36:15.148893Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-05-28T05:36:15.210135Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.210229Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.210960Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.211291Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.214562Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-05-28T05:36:15.215808Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:15.276017Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.276105Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.276151Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.276825Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.277103Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.277298Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.280530Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:15.281863Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:15.283279Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-05-28T05:36:15.342377Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.342484Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.343462Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.343842Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.347122Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-05-28T05:36:15.347848Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-05-28T05:36:15.377294Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.377983Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.381101Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-05-28T05:36:15.944072Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.944792Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.947978Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-05-28T05:36:16.009368Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.010094Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.013221Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-05-28T05:36:16.174642Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.175353Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.178712Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:16.239817Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.240575Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.243514Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-05-28T05:36:16.304741Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.305469Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.309130Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-05-28T05:36:16.369946Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.370654Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.374455Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-05-28T05:36:16.386585Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.387204Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.390117Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:16.419190Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.419272Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.419881Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.420506Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.423442Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:16.424719Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-05-28T05:36:16.454245Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.454917Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.457745Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:16.462838Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.494945Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.559036Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.559588Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.562459Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:16.591877Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.856975Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.857112Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.858075Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.858551Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.861665Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-05-28T05:36:16.862576Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-05-28T05:36:16.922865Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.922954Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.288313Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.288876Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.291487Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-05-28T05:36:17.320912Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.838828Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.839394Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.842309Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-05-28T05:36:18.871445Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.287418Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.287951Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.290657Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-05-28T05:36:24.320225Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.320545Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.320693Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.320950Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.321464Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.325563Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:24.327287Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:24.328353Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:24.354102Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.354160Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.354182Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.354381Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.354642Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.357193Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:24.358154Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:24.387852Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.387923Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.388125Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.390222Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:24.420130Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.484363Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:43.639898Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:43.639898Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] 
[2026-05-28T05:36:43.639898Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:43.639997Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] 
[2026-05-28T05:36:43.640005Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:43.640011Z] [nf-626e1ef8385cc04ea3c9036c4657229c-581f4-8c65j] [595_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec