.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/ac06c7e104ef09f7c0028f174c8c40/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt
Content

[2026-05-28T05:36:26.258185Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:26.259383Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:26.259408Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:26.259414Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:26.259419Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXCcCjm3'
[2026-05-28T05:36:26.259423Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:26.259428Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:26.259432Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:26.259435Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-28T05:36:26.259439Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:26.259442Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:26.259446Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:26.259449Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:26.259453Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:26.260370Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:26.260441Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:26.266148Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:26.266854Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:26.267327Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:26.267653Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:26.267808Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.268246Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.268337Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.268409Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.268564Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.268708Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.268841Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.268903Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.269238Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.269808Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.270047Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.270471Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.270613Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.270848Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.271104Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.271652Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.274244Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.274898Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:26.275799Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276054Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276317Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276395Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276518Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276587Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276746Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276809Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276925Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.276991Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.277103Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.277168Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.277375Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.277949Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278162Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278239Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278365Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278432Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278551Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278617Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278730Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.278796Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.279203Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.279565Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.279687Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.279750Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.279856Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.279918Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.280032Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.280095Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.280274Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.280338Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.280445Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.280513Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.280856Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281198Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281309Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281370Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281478Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281541Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281645Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281708Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281817Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281875Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.281983Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.282045Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.282148Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.282217Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.282454Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.282939Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.283055Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.283119Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.283225Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.283291Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.283394Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.283459Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.284982Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.285519Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.285650Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.285718Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.285828Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.285892Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.286003Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.286063Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.286184Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.286243Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.286350Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.286415Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.286626Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287211Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287321Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287383Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287496Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287562Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287667Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287728Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287838Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.287897Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.303444Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.303562Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.303643Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.303993Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.304191Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.304577Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.305667Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.305895Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.306095Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.306888Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.306990Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:26.307108Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.307683Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.308439Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.309078Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.310578Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.311495Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.312827Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.314572Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.318648Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:26.322798Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:26.324161Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:26.332010Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-28T05:36:26.332819Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-28T05:36:26.337879Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:26.338113Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:26.400703Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.401655Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.407527Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:26.771404Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.772524Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.776444Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-28T05:36:27.159487Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:27.188308Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.190543Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.194791Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:27.255996Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.257121Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.260648Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:27.572677Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.573729Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.577551Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-28T05:36:27.577816Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.578687Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.581777Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:27.643296Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.644324Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.647673Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-28T05:36:27.909274Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.910352Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.913632Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:27.975040Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.976156Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.980534Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:28.091936Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.092975Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.097736Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:28.159004Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.160341Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.164578Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-28T05:36:28.776959Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.778021Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.781984Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:28.843124Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.843329Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.844291Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.844623Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.849461Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-28T05:36:28.850512Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:28.881841Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.882801Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.883724Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.886906Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.887659Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:28.890451Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:29.052068Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.053049Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.056517Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:29.318284Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.319360Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.322580Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:29.383996Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.385054Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.388702Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:29.449754Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.450820Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.454174Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:29.515631Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.517070Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.517676Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.520746Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.523302Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-28T05:36:29.524638Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:29.585988Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.586095Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.587002Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.589006Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.590316Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:29.592602Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-28T05:36:29.654157Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.655166Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.659517Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:30.271855Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.272837Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.276698Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:30.337430Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.338429Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.341867Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:30.404283Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.405356Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.408581Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-28T05:36:30.469738Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.470690Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.473901Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:30.535109Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.536135Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.539519Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:30.600710Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.601653Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.605200Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:30.666282Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.667250Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.670588Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-28T05:36:30.731825Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.732781Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.736150Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:30.797292Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.798247Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.801616Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-28T05:36:30.913186Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.914120Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.917770Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:30.946977Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.947841Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.951210Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:30.964610Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.965472Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.968719Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:31.180297Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.181219Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.184623Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:31.213599Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.214463Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.217611Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:31.222413Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.223144Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.226407Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:31.255416Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.256247Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.259543Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-28T05:36:31.260283Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.260989Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.264097Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:31.325338Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.325448Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.326146Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.326695Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.330248Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:31.331196Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:31.392626Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.392755Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.393536Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.394263Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.398668Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-28T05:36:31.399146Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:31.460338Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.461183Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.465179Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-28T05:36:31.676197Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.677011Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.680480Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:31.741493Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.741601Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.742371Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.742927Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.747019Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-28T05:36:31.748230Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-28T05:36:31.810018Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.810841Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.814458Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:31.875702Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.876527Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.879517Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:31.940899Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.941001Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.942193Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.942973Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.946092Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:31.949631Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-28T05:36:32.009302Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.010303Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.013605Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:32.576472Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.577275Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.580591Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-28T05:36:32.641853Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.642865Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.646605Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:32.659002Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.659690Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.662673Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:32.724086Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.724867Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.728572Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:32.839983Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.840087Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.840783Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.841594Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.845438Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:32.846167Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:32.876775Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.876866Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.877526Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.878189Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.881190Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.882394Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-28T05:36:32.884244Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.885899Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:32.886899Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:32.916592Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.917720Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.918372Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.919321Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.923088Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-28T05:36:32.924094Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:32.984829Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.984925Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.985624Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.986261Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.989559Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:32.990653Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-28T05:36:33.050930Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.051599Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.054738Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:33.166296Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.166993Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.169968Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:33.231313Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.231981Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.235111Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-28T05:36:33.296317Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.296983Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.299859Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:33.362389Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.362484Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.363059Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.363676Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.367196Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:33.368256Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-28T05:36:33.429677Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.429797Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.430377Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.431165Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.434371Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-28T05:36:33.435477Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-28T05:36:33.495901Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.496549Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.500859Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:33.862324Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.862997Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.866642Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-28T05:36:33.880611Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.881219Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.884481Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-28T05:36:33.914785Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.915441Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.918640Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:33.981286Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.045597Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.046172Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.049542Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-28T05:36:34.062391Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.062933Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.066576Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:34.095220Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.103155Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.167246Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.167813Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.171592Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-28T05:36:34.232429Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.446982Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.447558Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.450652Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-28T05:36:34.513087Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.727504Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.727997Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.731113Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:34.792282Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.856523Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.856995Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:34.859435Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:34.889243Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.203901Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.204376Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.207461Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-28T05:36:35.268625Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.268916Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.269047Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.269626Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.270305Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.273745Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:35.275295Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:35.276326Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:35.303407Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.303470Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.303661Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.303912Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.305586Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.307167Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:35.308196Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:35.337397Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.337469Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.337645Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.340004Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:35.369582Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.886611Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:45.148099Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:45.148099Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] 
[2026-05-28T05:36:45.148099Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:45.148152Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] 
[2026-05-28T05:36:45.148159Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:45.148166Z] [nf-2aac06c7e104ef09f7c0028f174c8c40-6b116-5sdn7] [611_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec