cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 0.0s, est remaining 0.6s, peak mem 126MB, user 0.2s, sys 0.4s, output queue size 67
progress 10% @chr2:90000001, elapsed 0.1s, est remaining 0.5s, peak mem 126MB, user 0.5s, sys 1.1s, output queue size 95
progress 15% @chr2:239000001, elapsed 0.1s, est remaining 0.4s, peak mem 126MB, user 0.8s, sys 1.5s, output queue size 200
progress 20% @chr3:144000001, elapsed 0.1s, est remaining 0.4s, peak mem 126MB, user 1.2s, sys 2.1s, output queue size 361
progress 25% @chr4:67000001, elapsed 0.1s, est remaining 0.4s, peak mem 126MB, user 1.5s, sys 2.9s, output queue size 276
progress 30% @chr5:104000001, elapsed 0.1s, est remaining 0.3s, peak mem 128MB, user 1.9s, sys 3.3s, output queue size 438
progress 35% @chr6:78000001, elapsed 0.2s, est remaining 0.3s, peak mem 129MB, user 2.2s, sys 3.8s, output queue size 599
progress 40% @chr7:68000001, elapsed 0.2s, est remaining 0.3s, peak mem 129MB, user 2.6s, sys 4.4s, output queue size 760
progress 45% @chr8:57000001, elapsed 0.2s, est remaining 0.3s, peak mem 130MB, user 2.8s, sys 4.8s, output queue size 922
progress 50% @chr9:81000001, elapsed 0.2s, est remaining 0.2s, peak mem 130MB, user 3.2s, sys 5.5s, output queue size 416
progress 55% @chr10:110000001, elapsed 0.3s, est remaining 0.2s, peak mem 130MB, user 3.5s, sys 6.1s, output queue size 577
progress 60% @chr11:117000001, elapsed 0.3s, est remaining 0.2s, peak mem 130MB, user 3.8s, sys 6.7s, output queue size 739
progress 65% @chr13:20000001, elapsed 0.3s, est remaining 0.2s, peak mem 130MB, user 4.1s, sys 7.4s, output queue size 901
progress 70% @chr14:47000001, elapsed 0.8s, est remaining 0.3s, peak mem 130MB, user 4.5s, sys 7.9s, output queue size 19
progress 75% @chr16:14000001, elapsed 0.9s, est remaining 0.3s, peak mem 130MB, user 4.7s, sys 8.3s, output queue size 8
progress 80% @chr17:78000001, elapsed 1.0s, est remaining 0.2s, peak mem 130MB, user 5.0s, sys 8.8s, output queue size 25
progress 85% @chr20:29000001, elapsed 1.1s, est remaining 0.2s, peak mem 130MB, user 5.3s, sys 9.1s, output queue size 4
progress 90% @chrX:21000001, elapsed 1.1s, est remaining 0.1s, peak mem 132MB, user 5.5s, sys 9.5s, output queue size 78
progress 95% @chrY:29000001, elapsed 1.1s, est remaining 0.1s, peak mem 133MB, user 5.9s, sys 10.1s, output queue size 253
progress 100% @HLA-C*07:04:02:1, elapsed 1.2s, est remaining 0.0s, peak mem 138MB, user 6.1s, sys 12.8s, output queue size 3461
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 00050657
  features: 1f8bfbff fffa320b
  extended: d19f47ab 00000018
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 48 max 48
algo: TNfilter
license: sentieon:TNhaplotyper=48
input file size: 53230
output file size: 44181
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.010 user 0.001 sys 0.027 real
"predict_filter": 187 calls 0.000 user 0.000 sys 0.011 real
advance: 3219322 calls 1.701 user 3.964 sys 7.901 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.003 user 0.002 sys 1.291 real
fetch_ref: 476 calls 0.001 user 0.001 sys 0.009 real
idle: 18284 calls 0.389 user 0.131 sys 65.554 real
init: 1 calls 0.145 user 0.075 sys 0.381 real
overall: 145248256 mem 7.450 user 14.065 sys 2.691 real