Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c52805db36d3dcec6cee877e947f7c/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c52805db36d3dcec6cee877e947f7c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fd07f3bccb2b3e7b5521fe26c79365/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fd07f3bccb2b3e7b5521fe26c79365/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwm4RV1/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwm4RV1/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwm4RV1/chr6_138229684-138229952.bed.gz.tbi
[2026-05-28T05:36:19.831928Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:19.832645Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:19.832668Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:19.832674Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:19.832680Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXwm4RV1'
[2026-05-28T05:36:19.832685Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:19.832692Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:19.832697Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:19.832702Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:19.832707Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:19.832712Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:19.832717Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:19.832722Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:19.832727Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:19.833376Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:19.833493Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:19.839445Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:19.840010Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:19.840248Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:19.840665Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:19.840961Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.841498Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.841588Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.841659Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.841774Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.841841Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.841963Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.842035Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.842389Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.842615Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.842781Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.842994Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.843368Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.845091Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.845235Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.845353Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.845502Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.845633Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:19.845859Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.846340Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.846771Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.846854Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.846973Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847043Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847152Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847217Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847338Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847401Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847511Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847578Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.847776Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848179Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848324Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848392Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848554Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848646Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848761Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848828Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.848940Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849032Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849161Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849223Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849333Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849398Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849509Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849571Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.849699Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.850018Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.850472Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.850537Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.850642Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.850707Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.850831Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.850899Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851009Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851072Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851182Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851245Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851351Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851413Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851526Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851590Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.851937Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.852394Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.852521Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.852594Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.852703Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.852763Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.852873Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.852937Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.853047Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.853110Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.853216Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.853280Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.854694Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.855772Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.855993Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.856075Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.856196Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.856265Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.856382Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.856447Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.856568Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.856747Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.857449Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.857521Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.857634Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.857747Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.857856Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.857923Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.858035Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.858104Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.858242Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.858317Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.858642Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.859404Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.859601Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.859672Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.859793Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.859862Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.860035Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.860100Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.860221Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.860300Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.860593Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.861412Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.861578Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.861647Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.861767Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.861833Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.864209Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.865264Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.865541Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.865609Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.879830Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.879948Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880018Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880234Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880304Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880420Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880498Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880649Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880715Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.880764Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:19.884368Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.885508Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.885804Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.886156Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.886461Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.887429Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.888271Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.889090Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.890256Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.895004Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:19.898117Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-05-28T05:36:19.900732Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:19.903593Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:19.907137Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-05-28T05:36:19.909121Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:19.910664Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-05-28T05:36:19.911481Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-05-28T05:36:20.009456Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.009527Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.010672Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.011047Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.014593Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-05-28T05:36:20.015189Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-05-28T05:36:20.426818Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.428125Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.431273Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-05-28T05:36:21.044488Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.044564Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.044589Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.045706Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.046004Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.046235Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.051152Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:21.052433Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-05-28T05:36:21.110666Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.111806Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.114745Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:21.326680Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.327947Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.330632Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-05-28T05:36:21.392147Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.393754Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.396714Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-05-28T05:36:21.558208Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.560004Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.562830Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:21.592263Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.593662Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.596498Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:21.625761Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.626910Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.629694Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:21.691100Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.692247Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.694825Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:21.700101Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.701165Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.704030Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:21.733475Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.734574Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.737597Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-05-28T05:36:21.766729Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.767877Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.770632Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:22.032471Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.033714Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.036483Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:22.065797Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.066936Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.069697Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-05-28T05:36:22.131066Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.132169Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.134843Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:22.196258Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.197350Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.199991Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:22.209844Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-05-28T05:36:22.213217Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.213288Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.213329Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.214279Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.214593Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.214850Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.219451Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:22.220811Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:22.232970Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.233956Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.236529Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-05-28T05:36:22.277000Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:22.298157Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.298241Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.298273Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.299330Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.299638Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.299949Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.303317Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:22.304636Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:22.305888Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:22.365839Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.365920Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.365944Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.366900Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.367217Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.367651Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.369805Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:22.372554Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-05-28T05:36:22.373299Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-05-28T05:36:22.433172Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.434229Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.437092Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-05-28T05:36:23.049980Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.050073Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.051029Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.051384Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.054411Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-05-28T05:36:23.055576Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-05-28T05:36:23.083907Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.084040Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.084985Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.085413Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.088729Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-05-28T05:36:23.089442Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-05-28T05:36:23.250171Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.251219Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.254522Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-05-28T05:36:23.283820Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.284766Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.288301Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-05-28T05:36:23.349104Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.350147Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.353350Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:23.414401Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.415415Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.418194Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:23.447324Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.448232Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.450958Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:23.481538Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.482457Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.484906Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-05-28T05:36:23.514378Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.515305Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.517953Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-05-28T05:36:23.547532Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.548351Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.550817Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-05-28T05:36:23.580587Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.581463Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.584003Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-05-28T05:36:23.613354Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.614184Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.617179Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:23.678540Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.679468Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.682133Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:23.711408Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.712251Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.714879Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:23.715742Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.716440Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.719263Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-05-28T05:36:23.748581Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.749375Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.752272Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-05-28T05:36:23.781609Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.781683Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.781719Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.782514Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.783118Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.783428Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.786363Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:23.787527Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:23.788716Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-05-28T05:36:23.789088Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.789922Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.792376Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-05-28T05:36:23.821715Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.821788Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.821817Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.821839Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.822616Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.823263Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.824869Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.825397Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.825727Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-05-28T05:36:23.829224Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:23.830496Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:23.831243Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-05-28T05:36:23.858437Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.859335Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.861970Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:23.875241Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.876079Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.878943Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:23.940286Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.941144Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.944210Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:23.973453Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.973544Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.974339Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.974764Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.977693Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-05-28T05:36:23.978656Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:24.006932Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.007771Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.010572Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:24.071943Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.072048Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.072841Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.073303Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.076406Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-05-28T05:36:24.077497Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-05-28T05:36:24.839714Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.840418Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.843253Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-05-28T05:36:24.856404Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.857142Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.859811Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:24.872984Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.873668Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.876212Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:24.906028Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.906799Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.909472Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-05-28T05:36:24.938810Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.938891Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.939617Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.939944Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.942694Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-05-28T05:36:24.943723Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-05-28T05:36:24.972108Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.972871Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.975777Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-05-28T05:36:25.087116Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.087861Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.090492Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-05-28T05:36:25.252190Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.252277Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.252985Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.253470Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.256344Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:25.257442Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-05-28T05:36:25.285698Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.286410Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.289385Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:25.551204Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.551884Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.554831Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:25.567835Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.568566Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.571127Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:25.600502Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.601199Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.604124Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:25.617294Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.617933Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.620678Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:26.183442Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.184177Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.187049Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-05-28T05:36:26.298555Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.298645Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.299323Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.299580Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.302243Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:26.303381Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:26.315536Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.316150Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.318988Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-05-28T05:36:26.348161Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.348240Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.348877Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.349263Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.352035Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-05-28T05:36:26.352439Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:26.357529Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.358110Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.361094Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:26.390118Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.390188Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.390794Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.391259Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.393904Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:26.394892Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-05-28T05:36:26.423239Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.423322Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.423346Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.423896Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.424323Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.424723Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.427539Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-05-28T05:36:26.428680Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-05-28T05:36:26.429599Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-05-28T05:36:26.490344Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.490427Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.490454Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.491023Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.491340Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.492948Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.494268Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:26.495440Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-05-28T05:36:26.496465Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.497128Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.497285Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-05-28T05:36:26.499896Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:26.529100Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.529174Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.529205Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.529724Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.530006Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.530388Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.533024Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-05-28T05:36:26.534121Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:26.562133Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:26.563636Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.563703Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.564242Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.564841Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.567434Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:26.597060Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.597150Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.597631Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.600055Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:26.629550Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.743966Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.744046Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.744504Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.744898Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.747439Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:26.748608Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:26.778081Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.778151Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.042629Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.043191Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.045924Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:27.075230Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.189601Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.190086Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.192436Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-05-28T05:36:27.221981Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.222271Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.222384Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.222749Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.223283Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.226394Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:27.227822Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:27.228878Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:27.255449Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.255514Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.255538Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.255723Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.256053Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.258340Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:27.259190Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:27.288781Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.288844Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.289007Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.291200Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:27.321034Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.441631Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:38.721174Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:38.721174Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] 
[2026-05-28T05:36:38.721174Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:38.721259Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] 
[2026-05-28T05:36:38.721268Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:38.721276Z] [nf-73c52805db36d3dcec6cee877e947f7c-934c7-25cnj] [585_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec